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Detailed information on CNT30285916


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 8e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Triticum aestivumOryza sativa27.1733.295.78166forward
CNT30674769Triticum aestivumSetaria viridis21.626.8397.73132forward
CNT30523172Triticum aestivumSetaria italica21.620.8597.73132forward
CNT30178164Triticum aestivumSecale cereale58.7653.1196.94359forward
CNT30553804Triticum aestivumOryza glaberrima27.1727.5395.78166forward
CNT30435425Triticum aestivumAegilops tauschii48.2848.2896.95295forward
CNT30246600Triticum aestivumAvena sativa35.6836.0994.5218forward
CNT30656187Triticum aestivumTriticum dicoccoides59.5754.2596.15364forward
CNT30719929Triticum aestivumTriticum spelta61.5464.72100376forward

Expression of CNT30285916

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVRGRLRALRR

>peptide 2 (50 aa)
PTWDRLKAFGLIAYGHQNLSTHRTTAVCDEIFRKHDTQGFSLKDKRDTSK*

Sequence

>CNT30285916
AGCCGACATGGGATAGATTAAAAGCATTTGGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCACTACAGCAGTATGCGATGAAATATTCAG
GAAACATGATACTCAAGGTTTCAGTTTAAAAGACAAACGGGACACATCTAAATGAGTTCGATTCTCGATAGGTAGGTAAAAAGAGCAGAGCAAACGCGAG
CCACCTCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCAGTCG
GCGTTGGGGCACTCCTTCCTGAGCCTGGTCACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCT
TTTGCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT
CGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGCGAGGTCGCCTCCGCGC
GCTGCGGCGGC