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Detailed information on CNT30285397


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177674Triticum aestivumSecale cereale99.6265.3297.441326forward
CNT30384202Triticum aestivumTriticum turgidum8769.9397.751158forward
CNT30538116Triticum aestivumBrassica napus76.3383.8395.471016reverse complement
CNT30319422Triticum aestivumAsparagus officinalis32.1652.2696.26428reverse complement

Expression of CNT30285397

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHHLCPRSRGHPSLSRGFAACQALVRFFALH*

>peptide 2 (36 aa)
QHGVYKARERIHRRMADRRLLAIPASCRRVAACNPN*

>peptide 3 (64 aa)
MHFTTPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS*

Sequence

>CNT30285397
CAACACGGTGTGTACAAGGCCCGGGAACGGATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCTGCTTCATGCAGGCGAGTTGCAGCCTGCA
ATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTTGCGAGATCGCGGCCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGG
GCATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTTAACACCGGCGGCCTGTTCAGGGTTCCAAACTCATAGTGGCAACTAAACACGAGGGTTGCGC
TCGTTGCGAGACTTAACCCAACACCTTACGGCACGAGCTGACGACAGCCATGCACCACCTGTGTCCGCGTTCCCGAGGGCACCCCTCTCTTTCAAGAGGA
TTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTTGCTTTGCATTGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTC
ATTCTTGCAAACGTACTCCCCAGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGAGTCGCATAGCACCTAGTATCCATCATTTACGGCTA
GGACTACTGGGGTCTCTAATCCCATTTGCTCCCCTAGCTTTCGTCTCTTAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTTCGA
TCTCAATGCATTTCACCACTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTT
GACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCACGGCTGCTGGCACAGAGTTAG
CCGGTGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGC
TTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTG
ATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCGGACGCGAGCCCCTCCTTGGGCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATT
AGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCATTGAAAACACCACTTCCCGTTCGACTTGCATG
TGTTAAGCATACCGCCAGCGTTCATCCTGAG