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Detailed information on CNT30285390


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693623Triticum aestivumOryza sativa24.0511.8792.1389forward
CNT30673532Triticum aestivumSetaria viridis20.2719.048875forward
CNT30178572Triticum aestivumSecale cereale104.5972.7486.3387forward
CNT30383171Triticum aestivumTriticum turgidum101.8965.5790.19377forward
CNT30435028Triticum aestivumAegilops tauschii59.7371.0696.83221forward
CNT30242017Triticum aestivumAvena sativa20.8115.9496.177forward
CNT30655869Triticum aestivumTriticum dicoccoides81.0896.1593.67300forward
CNT30368187Triticum aestivumSorghum bicolor18.9228.5787.1470forward
CNT30576447Triticum aestivumOryza barthii17.5721.6787.6965forward

Expression of CNT30285390

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MVHKHEARREEEEGLDCRALDLAAWSRGGRQLGPLLDGEQVGGGGPDGELAAGDGAAGQAPHGDRLDGDERRHCDRAVRLRIQWACPGSGAAA

>peptide 2 (55 aa)
MGSRSGEAGRTASLRPEMELPARPLTATGWTATSDAIAIELCDCVYSGRVLVLELR

>peptide 3 (45 aa)
HAASFQLLIQSTKIKYQQSKHIDKGGIDEIHGTQARGEAGGGRRP*

Sequence

>CNT30285390
CACGCAGCATCTTTCCAATTACTGATACAAAGTACAAAGATCAAGTATCAACAGAGCAAGCACATAGATAAGGGGGGAATCGACGAGATCCATGGTACAC
AAGCACGAGGCGAGGCGGGAGGAGGAAGAAGGCCTTGATTGCAGAGCTTTAGATCTTGCCGCGTGGTCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTG
ATGGGGAGCAGGTCGGGGGAGGCGGGCCGGACGGCGAGCTTGCGGCCGGAGATGGAGCTGCCGGCCAGGCCCCTCACGGCGACCGGCTGGACGGCGACGA
GCGACGCCATTGCGATCGAGCTGTGCGACTGCGTATACAGTGGGCGTGTCCTGGTTCTGGAGCTGCGGCG