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Detailed information on CNT3028532


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 7e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526628Theobroma cacaoPhaseolus vulgaris8.4729.4586.0586forward
CNT30560988Theobroma cacaoActinidia chinensis14.8828.1281.46151forward
CNT30542807Theobroma cacaoBrassica napus6.432.0290.7765forward
CNT30234281Theobroma cacaoBrassica oleracea7.2932.7486.4974forward
CNT30508399Theobroma cacaoSolanum lycopersicum12.6160.3882.81128forward
CNT30172882Theobroma cacaoTrifolium pratense9.6621.0884.6998forward
CNT30655496Theobroma cacaoRosa chinensis12.0242.3682.79122forward

Expression of CNT3028532

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MALMIIKKGCHKCINICLHCDELANSCECL*

>peptide 2 (50 aa)
MKVGSTKLLEPQISSFPSLRHKLLGSLLVLHLQLSRLLYLQQKQNGAKFA*

>peptide 3 (53 aa)
MANLNRLCPVVFIFSDSSLMRLCQAQSDPNFSDTSTVELGLGSVSSVNGLSPL*

Sequence

>CNT3028532
GTGCCTCCTTCCCTCTTTTTGATCCATACTCAGGATAGATGATTTAAGGGCAAGATCAATTACAAAAGAGCACCTAGACAATGATATCTTGAATGCTAAG
CCTTATATGATCTTTGGCTTTTTGTAGACTTCAGGGTATAGCAAATATGGCCCTGATGATTATTAAAAAGGGTTGTCATAAGTGTATCAATATATGCTTG
CATTGTGATGAGTTAGCTAACTCATGCGAGTGCTTATAACACGGAAACAGAGATTTTGCTATTTGCAATTGATAAATGAATAGAATAAAATTTTCTTGTT
CTCATTTCAGAAAAATACAAAATTACAATATGATTCTTGATTCATGGCTAATTTGAATAGATTATGTCCAGTTGTTTTCATCTTCTCTGACTCGTCTCTC
ATGAGGCTTTGCCAGGCCCAATCTGATCCGAATTTTTCAGATACTTCAACCGTGGAATTGGGACTTGGAAGCGTCTCCAGCGTAAATGGTTTATCTCCCC
TTTAAGTCACCCCATGGTACTTGAAAAATGAATGACCTTTTGCAGATGTTTCACCATTTAAAATAGGGCGCAATTATGATTCTGGGCAGAAGCGATGAGT
AATTCATCTTCTATAATAGGCAATCTTCGATTGATTGACTTGCCTATTCTTACCCGTTCAACTGGGAAGTGACGTTAACGAAAGTCTCTTCTCTGCATGG
AATTGTCAAACCACCCATAGGATGATCAAAGCCAAACTCTTCTTCAGATTTACTCAGCAAAGCTTGAAATGAAGGTTGGTTCAACAAAGTTACTGGAACC
ACAAATCTCTTCTTTTCCGTCTCTCCGACATAAACTGCTAGGAAGCCTTTTGGTACTACATCTCCAGTTGTCGAGGCTCCTTTACTTGCAGCAAAAACAG
AACGGCGCAAAATTTGCTTAGCAAGAAAACGAATAGCCATTGCTTCTGATGATAAATTAAAGAGTTTCAAGTATATAAAAGATTAAAGAGAAGTGCTAGA
TCAAGAAAACTCGTG