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Detailed information on CNT3028475


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93ZC5|AOC4_ARATH, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30113588Theobroma cacaoFicus carica23.8617.4381.82110forward

Expression of CNT3028475

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVPGQIYGHIHQSRSCKWPRIGHPVSPERAELARTVQL*

>peptide 2 (42 aa)
AQQLKVGIAMGSVGKVWDSSMRLSGFSSRRGLDGRRWCHRLS*

Sequence

>CNT3028475
AGCTCAACAACTCAAGGTAGGAATTGCGATGGGGTCAGTTGGTAAAGTTTGGGATAGTTCCATGAGGCTCAGTGGCTTTAGCAGCCGCAGAGGGCTCGAC
GGCAGGCGATGGTGCCACCGGCTTTCCTAGAATCTCAGCTGGCAAATCAGATCCCGGAACCTCCGGTCACAGCCAAGTAAGAATCCTCGTACGTTAGATA
TGGTCCCTGGACAGATATATGGCCATATTCACCAAAGTAGAAGCTGTAAATGGCCTCGAATCGGTCACCCTGTTTCTCCGGAACGTGCTGAATTAGCACG
CACAGTCCAGCTGTGATGCCTAACCTTTTCTGCAGGTCTCCGGTGTAGAGCTTGTTGGTGAAAGGAACCAGGTCACCAAGAGAGTTGACAGGTTTTTGGC
TTAGTTTTAGAACTGCAGGGCTGTTCCTGTCTCGCTCGTTGATTTCATAAACGCATAGTTC