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Detailed information on CNT30284406


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30656161Triticum aestivumTriticum dicoccoides20.8345.29100245forward
CNT3079106Triticum aestivumBrassica juncea5.3623.610063reverse complement
CNT30214058Triticum aestivumHelianthus annuus6.3828.4110075forward
CNT30107453Triticum aestivumOryza longistaminata6.1227.1798.6172reverse complement
CNT3035140Triticum aestivumCucumis melo6.2129.6798.6373reverse complement

Expression of CNT30284406

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSTMLNEERREYIYRAEELPDWRSTDLCANS*

>peptide 2 (35 aa)
MSTMVNEVRSYLTRDREILCATGYPCPWSERVRAM*

>peptide 3 (32 aa)
MNHCHAWKKNWLVLHFYDVTVPFCCSCSLFEH*

>peptide 4 (54 aa)
MFVFELRFETCEVMFATENVFMLADVRVTLVLLQVARSPEGCRTDFYILWLPFI*

Sequence

>CNT30284406
GGTCATCTATTTTGGAACGGAGGGAATAGTATTTTTGTTAGTGGTGCATTCCCAAGATTTCTGTTCCATTTTGCTCTAGTTACTTAGGTCTACATTGTGA
ACGCGAAATTGATATGCAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGCCCCACAGTGGGTGCTTCCAT
ATATTTTTTTTGGAAAACTACCATCATTCAGCCTGAAGTTTCTGATTCTGACAGAAACGAACCTCCTTTCCAGAACAAACACCACTGCTAATCCCGCCAT
GTCAACCATGGTGAACGAGGTCAGGAGCTACCTGACCCGAGATCGAGAGATCTTGTGTGCTACGGGCTACCCATGCCCGTGGTCAGAGCGGGTTCGAGCC
ATGTGAGCTCACTGTCCGTGCCATCATTTAGTTGCTGATGTTTGTGTTCGAACTAAGGTTCGAAACATGTGAGGTCATGTTCGCAACTGAAAATGTCTTC
ATGCTTGCGGATGTTCGTGTAACTTTGGTGCTTCTGCAAGTTGCTAGAAGCCCGGAAGGATGCAGAACCGACTTTTACATTTTATGGCTGCCTTTCATAT
AATTTCCGTTGCATGAACCATTGCCATGCCTGGAAAAAAAATTGGTTAGTGCTGCATTTTTATGATGTAACCGTTCCATTCTGCTGTAGTTGCTCTCTCT
TTGAACATTGAACGTAGAAGCAGCATGTCAGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTG
GGCGCTTCCATTCTTTAGTGTTTTTTGCAAAACTACAATCATTCAGGCTGAAGTTTCTGATTCTGACAGAAACGAAGCTCCTTTCCAGAGCAAAATATCA
CTGCTCATCCCGCCATGTCAACCATGCTGAACGAGGAACGGAGGGAGTATATTTATCGAGCCGAGGAGCTACCTGACTGGAGATCGACAGATTTGTGTGC
TAACAGCTAAGGCTTGCCCAAGGTTGAGCCGTGAGCTCGCTTCCTTTCAAAGAGTCCAGGCTTGTACGAGCCTAACCACGACAGTTCCCAAGGACTGTAG
CAGCCGCTCGAGAGTCATTTTCCAAAAATGTAGCATCCAAATTTAATATATAAACCTTGCTGGAGGTTTCTCCCAT