« Back to Triticum aestivum search


Detailed information on CNT30284356


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 1e-84

BLAST vs NONCODE:
NONBRAT001321, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674998Triticum aestivumSetaria viridis27.7547.1194.97179forward
CNT30519871Triticum aestivumSetaria italica57.8356.3494.91373forward
CNT30700039Triticum aestivumQuercus lobata51.9468.5182.99335forward
CNT30279437Triticum aestivumChenopodium quinoa54.8846.2181.36354forward
CNT30628401Triticum aestivumVigna unguiculata16.1230.9581.73104forward
CNT30200358Triticum aestivumPisum sativum54.7356.7583353forward
CNT30177168Triticum aestivumSecale cereale63.7255.3297.32411forward
CNT30565750Triticum aestivumActinidia chinensis55.6632.6782.17359forward
CNT30655661Triticum aestivumTriticum dicoccoides81.8697.699.43528forward
CNT306284Triticum aestivumZea mays36.28109.3585.9234forward
CNT30719851Triticum aestivumTriticum spelta10089.8399.84645forward
CNT30154413Triticum aestivumPrunus persica16.1226.8786.54104forward

Expression of CNT30284356

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSSSVLFWYLRISRSATVPGRKRWGFLTPPVAGADLRAALVASCFLGALPPVDFLAVCLVRAMESEMRRQGG*

>peptide 2 (58 aa)
PRTECNIFISVTDGSKTVTSDQTHYIHHGTNNTLARIHFQRWTKAKVDLNTHGAQIAA*

>peptide 3 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

Sequence

>CNT30284356
CCGAGAACAGAATGCAACATTTTCATTTCAGTTACTGATGGCAGCAAGACGGTGACATCAGATCAGACACACTACATCCACCATGGAACGAACAACACAC
TAGCACGCATACATTTCCAACGCTGGACAAAGGCTAAGGTGGACCTAAACACTCACGGCGCACAGATTGCGGCCTAGGCCCTCTCTCCACGGATGCGGCG
GGCAAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCCACGAGGTAGGCCTCGGCGGCC
TCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCACGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGA
GCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTGACGCCGCCGGTGGCCGGGGCGGA
CTTGCGGGCGGCCTTGGTGGCGAGCTGCTTCCTCGGCGCCTTGCCGCCGGTGGACTTCCTCGCCGTCTGCTTGGTGCGGGCCATGGAGTCGGAGATGCGC
CGGCAGGGAGGCTGAGGAGATTTGGGGGATTGGGAGGGATGGGGG