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Detailed information on CNT30283980


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 1e-40

BLAST vs NONCODE:
NONGMAT000269, E-value = 3e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30360275Triticum aestivumLactuca sativa40.8542.9581.77192forward
CNT30114697Triticum aestivumEutrema salsugineum38.0929.281.56179forward

Expression of CNT30283980

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VALLRSSQATRNEPTKRWQSPSTDYQHYLQRDKQS*

>peptide 2 (49 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSGCTCFSTLKM*

>peptide 3 (31 aa)
STTSVLTSNEERANEALAITQHRLPALLAEG*

Sequence

>CNT30283980
GTAGCACTACTTCGGTCCTCACAAGCAACGAGGAACGAGCCAACGAAGCGTTGGCAATCACCCAGCACAGACTACCAGCACTACTTGCAGAGGGATAAGC
AGAGTTAACAGAGATGCAGATACAGAGACCAACTAGAGGCGGACGGAGGTCTGGATCTCCCTGGACGTGATGGTGGGCTTCTTGTTGTACCTCGCGAGCT
TGGCCGACTCCCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTT
CAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCCCTTCTTGGCCTTGCTGCCCTTCTTCCTGCCCCGGGTTTTCCCCTCGCCGCCGGCCTCCTTG
GACGCCGTCTTGCCCGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTGCCCGCCGGGGCCTTCTCCGCCG