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Detailed information on CNT30283943


BLAST search results

BLAST vs Swiss-Prot:
sp|P12363|PSBH_HORVU, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401838Triticum aestivumBeta vulgaris42.6853.1280.88204forward
CNT30177378Triticum aestivumSecale cereale98.9590.197.04473forward
CNT30231593Triticum aestivumAnanas comosus46.8628.4385.71224forward
CNT3053422Triticum aestivumAmborella trichopoda29.295.7482.86140reverse complement

Expression of CNT30283943

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MIDRNIANKAIVIPIKRVVPQPGATFPYSEFKGFSKLPALVRFGLGLEISSTVCVAIDSI*

Sequence

>CNT30283943
TCCCCCTAAACAATAAAATATGTTGACATGGGGAGGAACATATTTACTAGTTATATCATCTGCAATTGCCTGAATCTCTAGACGTTCCTCAAACCAATCA
TATACTTTACTCATATTCCAGAGATACCGAAACAAAAAAAACCGTGGTCGAACTACCATAATATCTAGAAATGTAGATCTTAAACTAGAAAGGCTTTTTT
GGATGGAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAATGGAAGAATTATAAATTTCTAAAATGATA
GATAGGAATATAGCGAATAAAGCCATTGTGATCCCCATAAAACGAGTAGTCCCCCAACCCGGGGCGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTA
AACTACCTGCACTAGTTCGTTTTGGCCTAGGTTTAGAAATATCTTCAACGGTTTGTGTAGCCATAGATTCTATTTAAT