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Detailed information on CNT30283847


BLAST search results

BLAST vs Swiss-Prot:
sp|P24065|PSBB_WHEAT, E-value = 2e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406228Triticum aestivumBeta vulgaris19.2595.9987.45263forward
CNT30200101Triticum aestivumPisum sativum67.7259.8386.92925forward
CNT30491922Triticum aestivumOlea europaea10.8351.0387.16148forward
CNT3047375Triticum aestivumPrunus dulcis21.6795.7988.85296forward
CNT3090743Triticum aestivumSolanum tuberosum31.4895.5689.3430forward
CNT30390502Triticum aestivumTriticum turgidum41.5842.5598.24568forward
CNT30135381Triticum aestivumLolium perenne46.0572.8995.55629forward
CNT3068316Triticum aestivumLeersia perrieri22.2552.596.05304forward
CNT30679618Triticum aestivumTriticum urartu37.4868.7295.51512forward
CNT30345946Triticum aestivumEragrostis tef20.293.5695.29276forward
CNT30414626Triticum aestivumPapaver somniferum30.8995.9188.86422forward
CNT30110673Triticum aestivumOryza longistaminata19.8410098.15271forward
CNT3022114Triticum aestivumPopulus trichocarpa17.7238.4186.36242forward
CNT3039143Triticum aestivumCucumis melo31.0438.1389.39424forward
CNT30577123Triticum aestivumOryza barthii7.8327.9496.26107forward

Expression of CNT30283847

Peptides detected in this lncRNA

>peptide 1 (60 aa)
DLDRYAYLFNTIFGFCSSKRNVCSNNPLLIYQNNRKCFKKSRHTAYKKLTSFFISKDGMS*

>peptide 2 (76 aa)
MHRKQSTRIIQYDSMNTIPRQTHGNTPLAKKNRHDVALFYRIEKDYPYPMYLTLLGDSVSESANIYFIPLKIRSQFC

>peptide 3 (87 aa)
IWTVTPTCSTLYLDSALLKGTSALTIPSSSTKTTGNVSKKVGIRRTKSSRPSLSLKTGCPNHPTAIPSPLSIEPALNNPPFAELLPI*

>peptide 4 (90 aa)
MPQSQSKPPLQEINEFQRSWENPKRVFPSAHQRIFLGPNIPNARSLPRNTSQKTQYAYLPHLHNSKYPDLLQFLLKYSNHPTNPLFLNES*

>peptide 5 (30 aa)
MMRSYSPRNKRIKTFCTPCWITACTFPVSP*

>peptide 6 (33 aa)
MPDRCQETQARKHNMRTCHTFITPNTRICYSSS*

>peptide 7 (33 aa)
MYPQQYDEKLFPPEQKDQNLLHPMLDYSLYFSS*

>peptide 8 (57 aa)
MKGITNIPCLHIGSRTGSEGSKTANSYKAIEPAQPETRAVCIICTASNRPGSFNTTV*

Sequence

>CNT30283847
GATCTGGACCGTTACGCCTACTTGTTCAACACTATATTTGGATTCTGCTCTTCTAAAAGGAACGTCTGCTCTAACAATCCCCTCCTCATCTACCAAAACA
ACCGGAAATGTTTCAAAAAAAGTAGGCATACGGCGTACAAAAAGCTCACGTCCTTCTTTATCTCTAAAGACGGGATGTCCTAACCATCCAACAGCTATTC
CATCCCCATTGTCCATTGAACCTGCTCTGAATAATCCCCCTTTTGCCGAATTATTACCAATATAATCATAAAAGGCTAATTTTTCGGGAATTTTAGACCA
AGCTTCTGATAAACTAAGATTTTCGGCTAAACCATTGCTAACTCTTCGATATATTTCTTGCTGAAAGTATCCCTGATCCCACTGATAACGAGTAGGCCCA
AATAATTCGACTGGGGTCGTTGCTGACCCATACCACATAGTTCCAGCAACTACGAAAGCTGCAAAAAAAATAGCAGTGATACTACTGGAAAGTACAGTTT
CAATATTGCCCATACGTAATCCTTTATATAGACGTTGAGGCGGACGGACACTAAGATGGAATAAGCCCGCTAATATACCCAATGTACCCGCAGCAATATG
ATGAGAAGCTATTCCCCCCGGAACAAAAGGATCAAAACCTTCTGCACCCCATGCTGGATTACAGCTTGTACTTTTCCAGTTAGTCCGTAAGGATCGGATA
CCCATATCCCAGGACCATACAAACCCGTTACATGAAATGCCCCAAAGCCAAAGCAAGCCACCCCTGCAAGAAATAAATGAATTCCAAAGATCTTGGGAAA
ATCCAAAGAGGGTTTTCCCGTCCGCTCATCAGAGAATATTTCTAGGTCCCAATATACCCAATGCCAGATCGCTGCCAAGAAACACAAGCCAGAAAACACA
ATATGCGTACCTGCCACACCTTCATAACTCCAAATACCCGGATTTGTTACAGTTCCTCCTGAAATACTCCAACCACCCCACGAATCCATTATTCCTAAAC
GAGTCATGAAGGGAATTACGAACATACCTTGTCTCCACATTGGATCCAGAACAGGATCAGAGGGATCAAAAACTGCTAATTCGTATAAAGCCATTGAGCC
AGCCCAACCAGAAACTAGAGCTGTGTGCATTATATGCACCGCAAGCAATCGACCCGGATCATTCAATACGACAGTATGAACACGATACCAAGGCAAACCC
ATGGAAATACCCCTTTAGCAAAGAAAAATAGACACGATGTCGCTTTATTTTATCGCATTGAAAAAGACTATCCATATCCTATGTACCTAACCCTTCTAGG
GGATTCTGTGTCAGAAAGCGCGAATATTTATTTCATTCCATTAAAAATAAGAAGCCAATTCTGTTC