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Detailed information on CNT30283676


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 4e-84

BLAST vs NONCODE:
NONBRAT001321, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30219843Triticum aestivumHordeum vulgare79.2289.0291.98511forward
CNT30508427Triticum aestivumSolanum lycopersicum13.3324.7884.8886forward
CNT30259840Triticum aestivumBrassica rapa36.2880.9784.19234forward
CNT3051266Triticum aestivumCucumis sativus28.2224.2782.97182forward

Expression of CNT30283676

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PRTECNIFISVTDGSKTVTSDQTHYIHHGTNNTLARIHFQRWTKAKVDLNTHGAQIAA*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 3 (72 aa)
MSSSVLFWYLRISRSATVPGRKRWGFLTPPVAGADLRAALVASCFLGALPPVDFLAVCLVRAMESEMRRQGG*

Sequence

>CNT30283676
CCGAGAACAGAATGCAACATTTTCATTTCAGTTACTGATGGCAGCAAGACGGTGACATCAGATCAGACACACTACATCCACCATGGAACGAACAACACAC
TAGCACGCATACATTTCCAACGCTGGACAAAGGCTAAGGTGGACCTAAACACTCACGGCGCACAGATTGCGGCCTAGGCCCTCTCTCCACGGATGCGGCG
GGCAAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCCACGAGGTAGGACTCGGCGGCC
TCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCACGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGA
GCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTGACGCCGCCGGTGGCCGGGGCGGA
CTTGCGGGCGGCCTTGGTGGCGAGCTGCTTCCTCGGCGCCTTGCCGCCGGTGGACTTCCTCGCCGTCTGCTTGGTGCGGGCCATGGAGTCGGAGATGCGC
CGGCAGGGAGGCTGAGGAGATTTGGGGGATTGGGAGGGATGGGGG