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Detailed information on CNT30283621


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30383394Triticum aestivumTriticum turgidum10067.6897.92578reverse complement
CNT30240700Triticum aestivumAvena sativa99.4873.1695.13575reverse complement
CNT30365428Triticum aestivumSorghum bicolor10026.7193.77578forward

Expression of CNT30283621

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MRVIALSAGVTPSLRIGLPMCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLHPGSRPGFCSGR

>peptide 2 (53 aa)
MSTTGRERYSVLRIFMGRRGRTGHRATCGALPATGPYLRLNRFQGWQAVKQKR*

>peptide 3 (40 aa)
PSPVLSANPFPEVTDPFCRLPLPTLFHWPEAVHLGDLMRL*

>peptide 4 (37 aa)
PRAQSLVPILFPKLRIRFADFPCLHCSIGQRLFTLET*

Sequence

>CNT30283621
CCCCGAGCCCAGTCCTTAGTGCCAATCCTTTTCCCGAAGTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCA
CCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAACGGTACTCGGTCCTCCGGATTTTCATGGGCCGACGGGGGCGCACCGGACACCGCGCGA
CGTGCGGTGCTCTTCCGGCCACTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCAGGCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCT
GCCGGCGTCTCCGGACTTCCTAACGTTGCCGTCAACCGCCACATCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGGGATGCGCGTGATCGCGCT
ATCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTG
AATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCACCCGGGCTCGCGCCCCGGGTTTTGCAGCGGCCGC