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Detailed information on CNT30283601


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 4e-84

BLAST vs NONCODE:
NONBRAT001321, E-value = 2e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Triticum aestivumOryza sativa60.9390.1482.95393forward
CNT3069242Triticum aestivumQuercus suber58.9170.982.11380forward
CNT30380641Triticum aestivumManihot esculenta37.5235.0280.99242forward
CNT30709007Triticum aestivumGlycine max26.3671.4382.94170forward
CNT3048083Triticum aestivumPrunus dulcis58.9154.1380.79380forward
CNT30398097Triticum aestivumTriticum turgidum64.0353.9992.25413forward
CNT3084175Triticum aestivumVigna radiata59.3836.7680.16383forward
CNT30441386Triticum aestivumAegilops tauschii39.8453.5493.77257forward
CNT30240007Triticum aestivumAvena sativa55.9764.3594.74361forward
CNT30309861Triticum aestivumCamelina sativa26.3627.4280170forward
CNT30140729Triticum aestivumLolium perenne64.0376.4893.22413forward
CNT30368649Triticum aestivumSorghum bicolor38.659.2992.37249forward
CNT30622400Triticum aestivumCajanus cajan53.837.9289.63347forward
CNT30358481Triticum aestivumLactuca sativa28.2219.8781.32182forward
CNT30644610Triticum aestivumCannabis sativa33.3346.7480.93215forward
CNT3099660Triticum aestivumOryza rufipogon22.9532.6793.92148forward
CNT30585391Triticum aestivumEchinochloa crusgalli63.4162.8394.38409forward
CNT3018856Triticum aestivumCyanidioschyzon merolae29.382.1781.48189forward

Expression of CNT30283601

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSSSVLFWYLRISRSATVPGRKRCGFLTPPVAGADLRAALVASCFLGALPPVDFLAVCLVRAMESEMRREGG*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 3 (58 aa)
PRTECNIFISVTDGSKTVTSDQTHYIHHGTNNTLARIHFQRWTKAKVDLNTHGAQIAA*

Sequence

>CNT30283601
CCGAGAACAGAATGCAACATTTTCATTTCAGTTACTGATGGCAGCAAGACGGTGACATCAGATCAGACACACTACATCCACCATGGAACGAACAACACAC
TAGCACGCATACATTTCCAACGCTGGACAAAGGCTAAGGTGGACCTAAACACTCACGGCGCACAGATTGCGGCCTAGGCCCTCTCTCCACGGATGCGGCG
GGCAAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCCACGAGGTAGGACTCGGCGGCC
TCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCCCTCACCAGGCGCTGGAAGGGGAGCTTGCGGATGA
GCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGCGGCTTCTTGACGCCGCCGGTGGCCGGGGCGGA
CTTGCGGGCGGCCTTGGTCGCCAGCTGCTTCCTCGGCGCCTTGCCGCCGGTGGACTTCCTCGCCGTCTGCTTGGTGCGGGCCATGGAGTCGGAGATGCGC
CGGGAGGGAGGCTGAGGAGATTTGGGGGATTGGGAGGGATGGGGG