« Back to Chenopodium quinoa search


Detailed information on CNT30283199


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639810Chenopodium quinoaNymphaea colorata96.9553.0693.182638reverse complement
CNT30531232Chenopodium quinoaEucalyptus grandis100.1180.4395.152724forward
CNT30318007Chenopodium quinoaCorylus avellana77.460.2696.532106reverse complement
CNT30519036Chenopodium quinoaJuglans regia100.0788.0795.72723forward
CNT3021656Chenopodium quinoaCitrullus lanatus100.1545.0195.672725forward
CNT30730441Chenopodium quinoaCorchorus capsularis51.56100.2196.651403forward
CNT30632331Chenopodium quinoaVigna unguiculata100.1580.4894.422725forward
CNT30195048Chenopodium quinoaPisum sativum98.2471.0794.012673forward
CNT30508033Chenopodium quinoaNicotiana attenuata90.1573.6694.942453forward
CNT30711135Chenopodium quinoaGlycine max74.8364.0995.582036forward
CNT3047210Chenopodium quinoaPrunus dulcis92.1777.9694.422508forward
CNT30588049Chenopodium quinoaMusa acuminata60.7977.3693.831654forward
CNT30544747Chenopodium quinoaBrassica napus67.9272.1695.081848reverse complement
CNT3083255Chenopodium quinoaBrassica juncea97.8399.8994.742662reverse complement
CNT30265711Chenopodium quinoaBrassica rapa76.5581.395.12083forward
CNT30210115Chenopodium quinoaHelianthus annuus8632.8589.962340forward
CNT30355977Chenopodium quinoaLactuca sativa56.0887.1594.231526forward
CNT30434068Chenopodium quinoaPapaver somniferum97.0299.7494.022640forward
CNT3035495Chenopodium quinoaCucumis melo97.3550.2995.322649forward
CNT30583181Chenopodium quinoaEchinochloa crusgalli82.896.1294.322253forward

Expression of CNT30283199

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLSADCSSCFRGESGSPRAGRGTDWERSLRGPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC*

>peptide 2 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 3 (44 aa)
MRPPPDCRPTVGASAPKGTCRRLSSRGGCAVRAALKYNSYRAAG*

>peptide 4 (50 aa)
SDMCASQRASKPVRRKEANWRDPLAGAPPTDLDLLRRVRVRAYLSGPERW*

>peptide 5 (40 aa)
MPLLLDLRSALRADPGGGHCQVGILAGAAHLLKDNAGVLR*

>peptide 6 (40 aa)
MNRKPGYGAQLRANLDPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 7 (34 aa)
MSALPIIVKQNSPSVGLFTTNRERELGLDRRETG*

>peptide 8 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 9 (35 aa)
MVIQPSTRGTVDSHNWSSRLVEKPVARSYRVLDYD*

Sequence

>CNT30283199
GTCTGACATGTGTGCGAGTCAACGGGCGAGTAAACCCGTACGGCGCAAGGAAGCTAATTGGCGGGATCCCCTAGCGGGTGCACCGCCGACCGACCTTGAT
CTTCTGAGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCC
CGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCA
GGATAGCTGGAGCTCATTCGCGAGTTCTATCAGGTAAAGCCAATGATTAGAGGCCTCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGT
AGGACGGCGCGGCTGCTTTGTTGAGCCGTGCCATGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAG
CCGGGTTACGGTGCCCAACTACGCGCTAACCTAGATCCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAA
GGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGTGACCTATACCCGGCCGTCGGGGCAAGTGCCAGGCCC
CGATGAGTAGGAGGGCGCAGCGGTCGCTGCAAAACCTGTGGCGTGAGCCAGGGCGGAGCGGCCGTTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAA
ATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGGGGGAAGCCTGTCCGATAGC
GCGTTTCGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGAAGTCCGGAGACGTCGGCGGGGG
CCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAATCGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTTTTG
TGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGACCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAAC
AGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCC
AGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTTCCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGTCCCT
TCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGC
GGATGTTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTT
AAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAG
GGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAG
CTTCGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAGTCGGAAGCGGGGCAATGCCCCTCCTTTTAGACCTAAGGTCCGCTT
TGCGGGCCGATCCGGGCGGAGGACATTGTCAGGTGGGGATTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACG
AGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAG
ACCTTTTGAATTTAAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTC
GATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACA
GGTTAGTTTTACCCTACTGATGACAGTGTCGCAATGGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAA
AGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCAGAAGCGACGCATGCGCCCGCCGCCCGATTGCCG
TCCTACAGTAGGGGCTTCGGCCCCCAAGGGCACGTGTCGTAGGCTAAGCTCGCGCGGCGGATGCGCCGTGAGAGCCGCCTTGAAGTACAATTCCTACCGA
GCGGCGGGTTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGCCCTAT
GTCGCTTCGATTCGTCCTCCC