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Detailed information on CNT30283003


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 7e-13

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Chenopodium quinoaSetaria viridis63.0452.7698.17602forward
CNT30524649Chenopodium quinoaSetaria italica82.9324.0398.23792reverse complement
CNT30641383Chenopodium quinoaNymphaea colorata94.0328.7595.1898reverse complement
CNT30550219Chenopodium quinoaIpomoea triloba96.4421.2198.15921reverse complement
CNT30702366Chenopodium quinoaQuercus lobata60.8458.3397.25581forward
CNT30378673Chenopodium quinoaArabidopsis thaliana68.0652.1396.92650forward
CNT30619000Chenopodium quinoaSesamum indicum54.3516.9994.99519reverse complement
CNT3020470Chenopodium quinoaCitrullus lanatus35.3962.7197.63338forward
CNT30632346Chenopodium quinoaVigna unguiculata96.4432.9397.39921reverse complement
CNT30490123Chenopodium quinoaOlea europaea30.7916.8993.88294reverse complement
CNT30506406Chenopodium quinoaNicotiana attenuata96.4435.9997.83921forward
CNT30162096Chenopodium quinoaPistacia vera13.0942.09100125forward
CNT3089926Chenopodium quinoaSolanum tuberosum36.6515.8297.71350forward
CNT30185187Chenopodium quinoaSecale cereale94.1425.4297.66899reverse complement
CNT30299053Chenopodium quinoaTriticum aestivum94.1425.0997.55899reverse complement
CNT30219690Chenopodium quinoaHordeum vulgare58.5381.6197.14559forward
CNT30401406Chenopodium quinoaTriticum turgidum94.1430.7197.78899reverse complement
CNT30569655Chenopodium quinoaActinidia chinensis96.6525.9296.75923reverse complement
CNT30543266Chenopodium quinoaBrassica napus64.7122.7797.09618reverse complement
CNT30508923Chenopodium quinoaSolanum lycopersicum17.495097.01167reverse complement
CNT30554477Chenopodium quinoaOryza glaberrima36.0247.5897.38344forward
CNT30147396Chenopodium quinoaMedicago truncatula96.4430.9697.39921reverse complement
CNT30438197Chenopodium quinoaAegilops tauschii63.2557.6998.18604reverse complement
CNT30245388Chenopodium quinoaAvena sativa34.1494.2298.16326forward
CNT30660235Chenopodium quinoaTriticum dicoccoides82.383.5397.2786forward
CNT30140161Chenopodium quinoaLolium perenne94.1426.4197.78899reverse complement
CNT3017954Chenopodium quinoaZea mays94.7623.8896.91905reverse complement
CNT30605146Chenopodium quinoaGossypium raimondii96.1360.1297.06918forward
CNT30216578Chenopodium quinoaKalanchoe fedtschenkoi96.4427.6597.5921reverse complement
CNT3067934Chenopodium quinoaLeersia perrieri23.5698.6893.78225forward
CNT30655407Chenopodium quinoaRosa chinensis96.4427.5597.5921reverse complement
CNT30208772Chenopodium quinoaHelianthus annuus38.0167.195.87363reverse complement
CNT30715685Chenopodium quinoaMalus domestica golden29.9523.588.81286forward
CNT30628241Chenopodium quinoaDaucus carota93.433.0497.98892forward
CNT30682012Chenopodium quinoaTriticum urartu68.1757.2198.46651forward
CNT30721631Chenopodium quinoaTriticum spelta94.1425.8997.44899reverse complement
CNT30346087Chenopodium quinoaEragrostis tef75.569.7397.64721reverse complement
CNT30595568Chenopodium quinoaOryza meridionalis17.2842.5393.94165forward
CNT30359771Chenopodium quinoaLactuca sativa90.1682.3997.91861reverse complement
CNT30484250Chenopodium quinoaChara braunii19.7926.0394.71189forward
CNT30429739Chenopodium quinoaPapaver somniferum90.3726.8393.86863reverse complement
CNT30571858Chenopodium quinoaVitis vinifera96.4426.5797.83921forward
CNT30644906Chenopodium quinoaCannabis sativa21.786589.9208forward
CNT3056076Chenopodium quinoaAmborella trichopoda89.5337.1492.75855reverse complement
CNT30118993Chenopodium quinoaCitrus clementina17.9148.5891.23171reverse complement
CNT3038324Chenopodium quinoaCucumis melo96.4448.8396.42921forward
CNT30331625Chenopodium quinoaDioscorea rotundata24.573.5896.15234reverse complement
CNT30151167Chenopodium quinoaBrachypodium distachyon12.4620.3898.32119forward
CNT3099709Chenopodium quinoaOryza rufipogon38.8517.0498.92371reverse complement
CNT30499372Chenopodium quinoaDigitaria exilis94.1426.4597.78899reverse complement
CNT30603680Chenopodium quinoaOryza punctata94.1422.7897.66899reverse complement
CNT30557400Chenopodium quinoaPanicum hallii92.2564.2195.12881reverse complement
CNT3039925Chenopodium quinoaMarchantia polymorpha34.2465.9395.11327reverse complement

Expression of CNT30283003

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKPKRPC*

>peptide 2 (58 aa)
RRTFDPLSESPSTRDSRITMADFRLCSTSQSHSQAGLYHYAHEQNRRLSLPSHTSVTL*

Sequence

>CNT30283003
CCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCAGTCTCACAG
TCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATAGACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAA
CTACCCACCTCGCAGTGTCCCGCCTTCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAAGATTGGTCGTTGTGTGT
CACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCA
TCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCACTACTTATGCGACAAGGAATTTCG
CTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCTTATAACACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTC
AGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAG
AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGT
TTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGCCTAAACGCCCTTGTTGACTATGACAACAGTCGCGACTA
TAAACAGACTCGCGACTATGGTAGGTTCTGCTTGCTGAAACCTCTACTCTAATCA