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Detailed information on CNT30282947


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 6e-86

BLAST vs NONCODE:
NONPOPT001747, E-value = 9e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382112Chenopodium quinoaManihot esculenta23.5154.4681.18287forward
CNT30485914Chenopodium quinoaOlea europaea19.8230.2183.88242forward
CNT30708158Chenopodium quinoaGlycine max18.3527.0281.25224forward
CNT30236263Chenopodium quinoaBrassica oleracea11.5529.0183.69141forward
CNT3031825Chenopodium quinoaTheobroma cacao11.3827.7487.05139forward

Expression of CNT30282947

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNQLTLPEPLKPKNLTVWLQSCGLNILRLGPGPNNVTSQVLG*

>peptide 2 (50 aa)
MGRTHNHPLRSHLNTLGPWHQGTIMGGLMLSLIWAGPSWLLSWFQTRIGT*

>peptide 3 (36 aa)
MKDEAEAMFDFIYLFRWIGGGYGRCVESLGLRSVWFS

>peptide 4 (39 aa)
MNTNSGNHIILTLPASCQVTPVSHSTVRAPRVANIAHLP*

Sequence

>CNT30282947
TAAAATTTAATCACAGAAGTAATTGTCAAGAGAAATTTAAGTATTTCCCCAGTAGTGCTACAGTAAAAAAAAATTAATTAAATTTAAAAAGAAGGCATAA
AGACTACCCGTTAATACTACGAATTTGTATTTTATTCATTCTTGAAAGTTCAACTCACTTTCTACTTTAAGGTGTTCAAAATTCAACTCATTTATACTTA
GATTATTTATTTTTGGCAAACCCCTTTTACCTCGGTAATTTTTTTTTTTGCTGTACTATTTAACTCTTTCCACTCATTATTTCTTACAAAGTATTATATC
CACCATTTTCTTACAAAACTACTGTAGCTTTCACTCCATCTTTCTCACTTGTTTCATTAGCCTATTTCTTTTTTTCTTTTTTCTTTTTTTTCCATTTATT
TTTAACCAACTTTTCTAAAAACAAGTGTTTATATTAACTTTCAGAACCAATATTAATATGCAACTTTAACCTGAAACAATCATCATTTTGATCTGAAATT
GTACATATGTGTCTAGTATGATTTCCTGTTAAAACATCTAGATTTCATCATTCTACAAATTTCCTTATAGTAAAATCATTTTAGACAACCAAGCAAGACA
TTTCTCTGAACAATGAATACAAACTCAGGAAATCATATTATACTTACCTTGCCAGCATCTTGCCAGGTGACACCAGTAAGCCACTCAACAGTCAGAGCAC
CAAGAGTAGCCAACATAGCCCATCTGCCATGAATCAGCTCACACTCCCTGAACCTCTGAAGCCCAAAAACCTCACTGTATGGCTGCAAAGCTGTGGACTT
AACATCCTCCGACTCGGTCCGGGTCCCAATAATGTCACCAGCCAAGTTCTTGGCTAAGTTCTGGTCCAAACCATCATAGTCATATTGTAAATACTCAGCA
GGCTTTCCTAGCCCAAATGGGTCGAACCCATAATCACCCACTAAGGTCCCATCTAAATACTCTGGGGCCTTGGCACCAGGGTACCATAATGGGCGGTCTG
ATGTTGAGCCTGATTTGGGCTGGGCCTTCTTGGCTACTTTCTTGGTTCCAAACCCGAATCGGCACGTGACCTTTCCTGAGTTGGATGGCACGTCAGGAAG
ACGAGTCCCGATGAAAGATGAGGCCGAAGCCATGTTTGATTTTATTTACTTGTTTAGATGGATTGGTGGTGGTTATGGGAGGTGTGTTGAGAGTTTAGGA
CTGAGAAGTGTATGGTTTAGT