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Detailed information on CNT30282946


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-114

BLAST vs NONCODE:
NONPOPT001747, E-value = 7e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672059Chenopodium quinoaSetaria viridis7.4721.5385.5376forward
CNT30640553Chenopodium quinoaNymphaea colorata25.7632.5579.77262forward
CNT30401900Chenopodium quinoaBeta vulgaris80.3383.5489.72817forward
CNT30526506Chenopodium quinoaPhaseolus vulgaris30.7826.4179.87313forward
CNT30708177Chenopodium quinoaGlycine max30.0929.0980.39306forward
CNT30144899Chenopodium quinoaMedicago truncatula11.0126.2382.14112forward
CNT30219415Chenopodium quinoaKalanchoe fedtschenkoi18.3959.9480.75187forward
CNT30213985Chenopodium quinoaHelianthus annuus29.456.3179.93299forward
CNT30620949Chenopodium quinoaCajanus cajan30.8829.1882.48314forward
CNT30360807Chenopodium quinoaLactuca sativa12.1928.8483.06124forward
CNT30328621Chenopodium quinoaAsparagus officinalis12.7843.6283.85130forward
CNT30147796Chenopodium quinoaBrachypodium distachyon8.0620.6586.5982forward
CNT30580858Chenopodium quinoaEchinochloa crusgalli18.7832.3279.06191forward
CNT30725306Chenopodium quinoaLupinus angustifolius12.8852.1981.68131forward
CNT3039307Chenopodium quinoaMarchantia polymorpha7.8724.183.7580forward

Expression of CNT30282946

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MWSLKREVVGQGDTSKPLNSQSTKSSQHSPSAMNQLTLPEPLKPKNLTVWLQSCGLNILRLGPGPNNVTSQVLG*

>peptide 2 (50 aa)
MGRTHNHPLRSHLNTLGPWHQGTIMGGLMLSLIWAGPSWLLSWFQTRIGT*

>peptide 3 (36 aa)
MLDLCQLKDRLLFRVRCQAQWVEGSTWVKPLFRVKL*

>peptide 4 (34 aa)
PIIHSLQYWYKITVGTSELHNEPYIMGTLKMLNV*

>peptide 5 (30 aa)
MPSPMGRRFHLGKASFQGQALNSSGTRCIR*

>peptide 6 (33 aa)
MRWRQRRPRPKPCLILFTCLDGLVVVMGGVLRV*

>peptide 7 (38 aa)
MKDEVAAAEAEAEAMFDFIYLFRWIGGGYGRCVESLGLR

Sequence

>CNT30282946
CCCCAATAATCCATTCTTTACAGTACTGGTACAAGATAACAGTAGGCACTTCTGAACTACACAATGAACCCTATATTATGGGCACTTTAAAGATGCTTAA
TGTATAGGATCCCCAACCAGAGTCATTCTACAGGAACCTGTCCAAGATGGTAGTGTGGAGCGGGTCGCTCAAATGAGTCGCCCAGTTGTTAAGCGGGCCT
TTACCGGTAACAGCAGCCTGAACAGCAAAGCCAAGGAAACCAACCATAGCTAGCCTGGCATGCTTGATCTCTGCCAACTGAAGGATCGGCTTCTTTTCCG
GGTCAGATGCCAAGCCCAATGGGTCGAAGGTTCCACCTGGGTAAAGCCTCTTTTCAGGGTCAAGCTCTGAATTCCTCTGGAACTCGATGTATCCGATGAC
CAACACCTCAATCCAGATCAATGTGGTCATTGAAAAGGGAAGTGGTTGGCCAAGGTGACACCAGTAAGCCACTCAACAGTCAGAGCACCAAGAGTAGCCA
ACATAGCCCATCTGCCATGAATCAGCTCACACTCCCTGAACCTCTGAAGCCCAAAAACCTCACTGTATGGCTGCAAAGCTGTGGACTTAACATCCTCCGA
CTCGGTCCGGGTCCCAATAATGTCACCAGCCAAGTTCTTGGCTAAGTTCTGGTCCAAACCATCATAGTCATATTGTAAATACTCAGCAGGCTTTCCTAGC
CCAAATGGGTCGAACCCATAATCACCCACTAAGGTCCCATCTAAATACTCTGGGGCCTTGGCACCAGGGTACCATAATGGGCGGTCTGATGTTGAGCCTG
ATTTGGGCTGGGCCTTCTTGGCTACTTTCTTGGTTCCAAACCCGAATCGGCACGTGACCTTTCCTGAGTTGGATGGCACGTCAGGAAGACGAGTCCCGAT
GAAAGATGAGGTGGCGGCAGCGGAGGCCGAGGCCGAAGCCATGTTTGATTTTATTTACTTGTTTAGATGGATTGGTGGTGGTTATGGGAGGTGTGTTGAG
AGTTTAGGACTGAGAAG