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Detailed information on CNT30282912


BLAST search results

BLAST vs Swiss-Prot:
sp|P06453|ATPF_SPIOL, E-value = 2e-124

BLAST vs NONCODE:
NONCQUT006914, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Chenopodium quinoaOryza sativa48.239.1486.27517forward
CNT30678565Chenopodium quinoaSetaria viridis17.4420.3791.98187forward
CNT30535895Chenopodium quinoaEucalyptus grandis15.329.693.29164forward
CNT30703171Chenopodium quinoaQuercus lobata54.014.8690.16579forward
CNT30505351Chenopodium quinoaNicotiana attenuata46.5514.3690.98499forward
CNT30179302Chenopodium quinoaSecale cereale15.3925.6292.12165forward
CNT30291829Chenopodium quinoaTriticum aestivum50.7513.884.93544forward
CNT30222903Chenopodium quinoaHordeum vulgare14.2753.6890.2153forward
CNT3086153Chenopodium quinoaVigna radiata16.4279.6485.8176reverse complement
CNT30541474Chenopodium quinoaBrassica napus54.5719.1287.01585forward
CNT30511193Chenopodium quinoaSolanum lycopersicum39.8324.185.01427forward
CNT30554216Chenopodium quinoaOryza glaberrima47.2977.7686507forward
CNT30145240Chenopodium quinoaMedicago truncatula20.3439.2191.74218forward
CNT30660677Chenopodium quinoaTriticum dicoccoides50.7540.7884.93544forward
CNT30598585Chenopodium quinoaFraxinus excelsior49.7262.4991.37533forward
CNT3017990Chenopodium quinoaZea mays50.9316.585.16546forward
CNT30205079Chenopodium quinoaHelianthus annuus51.9677.0489.59557forward
CNT30621081Chenopodium quinoaCajanus cajan51.4952.8788.22552forward
CNT30409854Chenopodium quinoaPapaver somniferum54.187.4891.38580forward
CNT30121210Chenopodium quinoaCitrus clementina55.0415.1589.83590forward

Expression of CNT30282912

Peptides detected in this lncRNA

>peptide 1 (32 aa)
DNFANFVCSNGCHESFLIRFSFGNKKIIPTYN*

>peptide 2 (29 aa)
MPILALMVRKCNSLFKELFRVPRAPCKAC*

>peptide 3 (62 aa)
MAFPRSSSEFRIVFKILCFRLSNKSLNTPFPKKINTPSTTLRFIRFVAKISVLNPKLPADGQ*

Sequence

>CNT30282912
GATAATTTTGCTAATTTCGTCTGCTCGAATGGTTGCCATGAGTCTTTCTTAATTCGTTTTTCTTTTGGAAACAAAAAAATAATACCTACATACAATTAAC
TAGAAGGACTAATCAGTTATTTCGTTCATCGCACCAAACATGCCAATATTAGCATTGATGGTCCGTAAATGTAACTCATTGTTCAAAGAACTATTCAGAG
TCCCTAGAGCTCCTTGTAAGGCTTGTTGAAAAACCCGTTGTCGGACTTGATTAATCGCTTTTTGTTGTTCAAACTGAATGGTTTCGTTTTTATAATTTTC
GAATTGTTCTAAAGTTTTATAAGTTGAATTAATCAAATTCATTTTTTCTCGTTCTATTTCAGAATATCCATTCACTCGAAACTGATCCGCGTCTATTTCC
ACTTTCTTTAAGCGAGCCCTGGCTTTTTCCAACTGTTCAATGGCCTTTCCGCGTAGTTCGTCTGAATTTCGAATAGTATTCAAGATCCTCTGTTTTCGAT
TATCTAATAAATCACTTAACACTCCCTTTCCAAAAAAGATCAATACACCAAGCACTACACTGAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAA
CCCGAAACTCCCGGCGGATGGCCAGTGACCCAAGAAAACGAAAGAATCGGTTACATTTTTCATATGATCTCCTCTTATAGATAAACTAAAAAATCGTTGT
ATTTTTTAACTTCTTTACTACTTCTAAATTCGAAATGAATTTTTTTTTTGAATTGAGATTCCCAACAAAAAGAATACTTAACTTATTGGAATAGAATTCC
TAATTAGGTACTCGGTTTCGTGTGAATTGCGAAATACTCCTTTTGTTGCAACACTTCTCCCTCGAACTAAGAAGGGGAAGGAAGGAAGAAAGCGAGTGGG
TAACACGAATTCTTCATCCTCAAATGAAGTCCTTCCCGCGTATTATTTTCTCAACGAATAAGTAATTCTGTAGGAGCAATTTTTCACCATAAATGTGAAA
AAGCAACCTCCAAGTTCAAGACTAGAAAAGAAATACGTATTTCTTATATTTCTTTTTCTTTTCTCGAATTAA