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Detailed information on CNT30282683


BLAST search results

BLAST vs Swiss-Prot:
sp|P25819|CATA2_ARATH, E-value = 1e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Chenopodium quinoaNymphaea colorata31.733.9179.45292forward
CNT30516671Chenopodium quinoaJuglans regia38.9876.7184.4359forward
CNT30373064Chenopodium quinoaArabidopsis thaliana31.3850.6179.58289forward
CNT30501026Chenopodium quinoaCoffea canephora25.9515.6587.03239forward
CNT3021611Chenopodium quinoaCitrullus lanatus38.3388.9283.29353forward
CNT3070085Chenopodium quinoaQuercus suber27.3638.6582.54252forward
CNT30381388Chenopodium quinoaManihot esculenta24.138.0880.63222forward
CNT30405510Chenopodium quinoaBeta vulgaris21.8242.7790.55201forward
CNT3046375Chenopodium quinoaPrunus dulcis48.2163.6182.21444forward
CNT30168584Chenopodium quinoaPistacia vera8.3628.4188.3177forward
CNT30638211Chenopodium quinoaCapsicum annuum21.0634.7779.9194forward
CNT30567580Chenopodium quinoaActinidia chinensis24.3244.884.82224forward
CNT3085325Chenopodium quinoaVigna radiata45.1758.8480.29416forward
CNT30542456Chenopodium quinoaBrassica napus25.0853.4780.52231forward
CNT30238041Chenopodium quinoaBrassica oleracea26.632.2481.63245forward
CNT30668803Chenopodium quinoaTriticum dicoccoides33.2239.7981.05306forward
CNT30313019Chenopodium quinoaCamelina sativa24.6537.0981.06227forward
CNT3080335Chenopodium quinoaBrassica juncea31.1650.6280.49287forward
CNT30263082Chenopodium quinoaBrassica rapa36.0599.182.53332forward
CNT30475173Chenopodium quinoaSaccharum spontaneum36.8145.6379.65339forward
CNT30654455Chenopodium quinoaRosa chinensis19.7639.8281.87182forward
CNT30715065Chenopodium quinoaMalus domestica golden48.2131.2281.53444forward
CNT30624536Chenopodium quinoaDaucus carota39.225.6984.49361forward
CNT30478285Chenopodium quinoaArabidopsis halleri17.2645.9581.76159forward
CNT30154268Chenopodium quinoaPrunus persica22.0442.6584.24203forward
CNT30570453Chenopodium quinoaVitis vinifera13.3628.0285.37123forward
CNT30704833Chenopodium quinoaPrunus avium47.9961.981442forward
CNT3022395Chenopodium quinoaPopulus trichocarpa34.5377.3785.53318forward
CNT3038372Chenopodium quinoaCucumis melo39.7433.2780.6366forward
CNT3050211Chenopodium quinoaCucumis sativus38.4494.1581.36354forward

Expression of CNT30282683

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MESSPPEKQHKVRNWSKKISRNITSKKQKLKPQQIPPHLCA*

>peptide 2 (33 aa)
MSSGHVLVTSRGSKSNLSSSAGSIVWINSFHSG*

Sequence

>CNT30282683
ATTTGAGTGGGCGACAAAGTTGACAAGTTATTACACCAACTTTGATCCTTCTTTGTATCTTCCTCAGTTCACTATGTCATGACTGCTTTCTTGATCCCGT
TTCTCCCATATTCCCTCTAGTACTCGTCTCTCTTTTCCTGCACAACCGCAAGCCCGGCCCTCGAGGCTTCACCACCACCACGACACCACGAACTTTACCA
GTATTTTTCAAGGACGTGCAGCAAGCTAAGCCACATCACAGAAAATGGAGACCGATCTAGCTAAGGACAATAACTCAGATCACTTGCTACAAGAAGTGTA
GTAACAAAAGGAATGGGATATCTCTCAGCATGACGAACGGGATCATATCTTGATGGAAAGTAGTCCACCTGAGAAACAGCATAAAGTAAGAAATTGGAGC
AAAAAAATAAGCAGAAATATTACTAGCAAGAAACAGAAACTGAAACCGCAGCAAATACCTCCTCATCTCTGTGCATAAAGTTCATGGAACCATCATAGTG
ATTGTTGTGATGAGCACACTTGGGAGCGTTGACTGGAAGTTGCAGGTAGTTGGGACCAAGACGATGCCTTTGGGTATCAGCATATGAGAAAATTCGAGTC
TGAAGCAGCTTGTCATCTGAGTAGTGGACCCCAGGAACAACAATAGCAGGGCAAAAAGCCAGCTGCTCATTTTCAGCAAAGAAGTTGTCAATGTTCTTGT
TCAAGACCATACGACCCACTGGCTGAAGTGGCAAAATGTCCTCAGGCCATGTTTTGGTAACATCTAGGGGGTCAAAGTCAAATTTATCTTCATCAGCAGG
GTCAATTGTCTGGATAAACAGCTTCCATTCAGGATAGTTTCCAGCTGCAATTGAGTCAGTAAGATCCTGAGTAGCATGGCTGTGGTTAGCTCCTCCAACT
TTGACGCATTCATCCTCCAAC