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Detailed information on CNT30282455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701953Chenopodium quinoaQuercus lobata6.1531.1687.2186forward
CNT30377298Chenopodium quinoaArabidopsis thaliana9.085182.68127forward
CNT3071730Chenopodium quinoaQuercus suber6.1521.1886.0586forward
CNT30566785Chenopodium quinoaActinidia chinensis9.0147.3784.13126forward
CNT30311909Chenopodium quinoaCamelina sativa9.1527.0685.94128forward
CNT3061941Chenopodium quinoaArabidopsis lyrata4.2923.0886.6760forward
CNT30468549Chenopodium quinoaSaccharum spontaneum5.7234.788580forward
CNT30606370Chenopodium quinoaGossypium raimondii8.2955.587.07116forward
CNT30625473Chenopodium quinoaDaucus carota8.9337.9984125forward
CNT30351629Chenopodium quinoaEragrostis tef7.5132.0181.9105forward
CNT30596757Chenopodium quinoaOryza meridionalis5.7234.4883.7580forward
CNT30107294Chenopodium quinoaOryza longistaminata5.7229.4183.7580forward
CNT30175658Chenopodium quinoaVigna angularis5.0828.7491.5571forward
CNT30558210Chenopodium quinoaPanicum hallii5.7238.8383.7580forward

Expression of CNT30282455

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMRLRSWLISAWKANVSASAIDEISLTSRSNLK*

>peptide 2 (45 aa)
MESYIGRVTDKLTKKDLLVTVESVDDETEKLVDFSLEGKRLSFRH*

Sequence

>CNT30282455
ACATGACACTGACTTTGACAATTTAGACAAAAATTAAATAGGAAAGGACCAATTTAATAAACAAATTACTTCACAATCACTCAACGTACTAATTTTGTTT
GCAATTTCTTAATTCATACAATTTAAAAACAATTCAATCACTAAATTCTAATTGTAGCCGTTGCCGCAACCACCTAATTACATCAACATATTCACGGATC
GAACAAAAAGCATCATAAAACATGAAATTAATATAAAATCACAGAAAGAGCAAAAAAATGGAGAGAAAATGGAATCATACATCGGAAGAGTTACTGATAA
GCTCACGAAGAAAGATCTCCTTGTTACTGTAGAAAGTGTTGATGATGAGACTGAGAAGCTGGTTGATTTCAGCTTGGAAGGCAAACGTCTCAGCTTCCGC
CATTGATGAGATTTCTCTGACCTCGAGATCGAATTTGAAATGAAGAGAGAGTTTCTAGATCCTTCTATTTGAACGTGAAGCTTAGGAAATCTCGGAGCGG
AATTTTCTTTTTTTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTTAAATTGAACAAATGATTGATGCAATTGGGGATGAGGTTGCTTCATAGCTAGGTAGA
TCATCCTTCTTAATTTTTTAATGAAAAATCGACTATCACGATGAGGTTGTCTTATTTATGATTACATTATTTATATCAATGAAAAAAACAAGTGTTTGTT
AGGCATTTTAAACCTTCGTTCAAAATTTCTTTTAAAAAAAAGAAAAAAAAAAAAGACTTTAGAGCAAAGTTCGAAAGAGAGGTTTATTAGTTTGATTGAC
TTGCCCTCAATAAAAAATATTGAGCTATTTCAATAACTACTATTGAGTATTTTGTATATTACAAAAAAAAAATGGAGTACTATAATTCATATTATATACA
ATTGATTTTTTTTAAGCTCGTGTATACGTTTTATATATACTAGGATAGCCAACGCGGGCGTTGCGCGCGGGGTGACTTGCCTTTTCGGGTTAATTTTTCT
TGGCTTGTGTTTGAACTTCACATGGAATTAATTACACATGATTTAACAAGCTCAAAAGTTAACAAATAAGTAGAAAATGAAGTTGGACAAAATGCTTCTA
AGAATTTAGCTCTGCTAAACCTTTGCTAGCTCCACTTGTAGCCTCTTTGTCCACCCTTGATAATTCCCTTGAATCCCTTCTTGCTTTCTTCCCCTTTTCA
CCATAGTCAGTTTGGTTTCCTTTCTTCCTAGTACATCTACTTCGGCACAATCATAGATTAATTTCATTAGTCTCAATGTCTTTTAAACACAATTATGGGT
AAGTCGTTAATTTTGACCTTCACGAAATAAAGAAAAAAAACGCTCACATAAAGCAACAACCTTTCGTTGTCCGGTGACTAGTGTTGTCATGTAATTAAA