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Detailed information on CNT30282434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Chenopodium quinoaArabidopsis thaliana16.1745.0183.63397forward
CNT3019970Chenopodium quinoaCitrullus lanatus6.451.6484.71157forward
CNT30381504Chenopodium quinoaManihot esculenta13.0837.4683.18321forward
CNT30712266Chenopodium quinoaGlycine max4.8943.886.67120forward
CNT30635894Chenopodium quinoaCapsicum annuum6.4428.0689.87158forward
CNT3094731Chenopodium quinoaSolanum tuberosum14.2223.2585.1349forward
CNT30187559Chenopodium quinoaSecale cereale7.4127.2987.36182forward
CNT30298345Chenopodium quinoaTriticum aestivum16.2156.5386.68398forward
CNT30394033Chenopodium quinoaTriticum turgidum16.2129.4286.68398forward
CNT30560521Chenopodium quinoaActinidia chinensis12.6343.1281.61310forward
CNT30510308Chenopodium quinoaSolanum lycopersicum5.552.3388.89135forward
CNT30554643Chenopodium quinoaOryza glaberrima4.0320.8484.8599forward
CNT30441217Chenopodium quinoaAegilops tauschii9.7432.1787.45239forward
CNT304322Chenopodium quinoaZea mays9.7441.8684.52239forward
CNT30227528Chenopodium quinoaAnanas comosus7.4525.1785.25183forward
CNT30625469Chenopodium quinoaDaucus carota16.1726.5482.87397forward
CNT30352420Chenopodium quinoaEragrostis tef13.5253.6383.43332forward
CNT30477326Chenopodium quinoaArabidopsis halleri12.2634.0585.71301forward
CNT30362636Chenopodium quinoaSorghum bicolor8.6422.7285.85212forward
CNT30481150Chenopodium quinoaChara braunii12.6321.9478.71310forward
CNT30704690Chenopodium quinoaPrunus avium16.6620.1383.86409forward
CNT3055965Chenopodium quinoaAmborella trichopoda8.6424.480.19212forward
CNT30323609Chenopodium quinoaAsparagus officinalis17.2725.4785.14424forward
CNT30103353Chenopodium quinoaOryza rufipogon16.1739.5487.66397forward
CNT30577638Chenopodium quinoaOryza barthii9.6136.4288.56236forward

Expression of CNT30282434

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLIEKTMLLKKSSPRSTSTSPSLFFPFKKFWFLGTFKILFCCVK*

>peptide 2 (92 aa)
MLESLSAWAFMILSMLADQPYSPVTKQQGESTTRSETITFSTLSPRTSLMTLHRPSNFSFCSSLFFFSSSLSSSLSPSLVAETNFFPSNSLS*

>peptide 3 (29 aa)
MTSKQVHLFLSSSMIGFSGLISMVFLEDM*

>peptide 4 (33 aa)
MDYFYNSNFMGPTPAQPFPLPPNHQTRPPPYPK*

>peptide 5 (31 aa)
MPCNTSRYQDLSQAEVEVVVVDWWACMESVT*

Sequence

>CNT30282434
AGAGTTTTTCGTAGCTTACATATGCTTGGACCAGCGATTGGCTTGAAAATATGAATGGATTAGGCAAGGCATCTCCCTAGGTGAAAAAGGTGACCCAGGT
AGGAGAGAGATATAAATGTTGAAAGATCTTATGTTGGGTTTCAATTGCTTTAAGTCCCTTTCAGTCATGGCCATTAATGCTAATTGAAAAGACCATGTTA
TTGAAGAAATCATCACCAAGGTCAACATCAACCTCTCCCTCCCTCTTTTTTCCCTTTAAAAAATTTTGGTTCTTAGGTACTTTTAAAATATTGTTCTGTT
GTGTTAAGTGACACGTATATATTTCACGTATATATTAACATATTTAAATATTCCCAACTATGGATTATTTTTATAATTCGAATTTTATGGGGCCGACGCC
AGCGCAACCCTTCCCCCTACCCCCGAACCACCAAACCAGGCCACCACCTTACCCTAAATGAAACCCCTAAAAAAATACTCCCCATCGCATAAACCCCCTA
ACCGGCCCACCCCCACCCTCACCACCATCGCATAAACTCCCTATCCGGCCCTCCCCCACCCTCGTAACCCGACTTGCTATAATTGATGGTGTATTGGAGC
AAATGGATGACGGATTGGTGCTATTGTTGTGCGAATTGCTGACTTTGGCTGGCGGTGTACAGGGGTGTTGAATTGTGGTCGCAGCGGAGCTGGCGGTGTA
TAGGGGTTTTGTGGTTTCAGGCGGAAGGGGAGTGACGTCGGCACGGGGGAAGGGTTTCTGGGCAACCGACGGGGATGGGGGTTCCAGGAGGATGCTGTGG
CTGGTGGTGGGGAGGGTAGTCGTGGGTGGGGCTGGGTTTGTTATTTTATTTTTGTAAGTTTTTATTTTTTTAATTAATTAAGCTTTTTTTTAAAAAAACA
TTCTAACCAATTACGTGGTGCCACGTATCACCTTAACCTGTTATAACAGGTTGGGTGACTGGTTGAGACCATTTGAGTGAATGACCCCCAAAGTTCGGAT
ATTATGAGATTCATGATGGCATGGGTCTCGAGCTCTATTACAATTGATCATTCATGGTTCTTTCTCTCTCCTCGCCTTTTTTTTTAAGTGAATTTTTATG
TTAATTTGGGACTGATTTTGTTTGAATGTTGATTATTTGATTGATAATTTGAGTTGTTGTTGTTAATTTTGATGGGTTGGATTATGGATATTCTGGGAAT
TTGGATGTGGGTTTTTGTTTATTGTTGTGCTTGGTGTTAACGATTTTGTTTCTTTCTAATCCATTATCATTCTCATCATCACTGGTGGCGTACTCCAGGC
CTCCAATTGTGATTTCCCTATCGAGGATTGCATACTCTGACTGTATGCCTTGTAATACGAGTCGTTATCAGGACTTGTCTCAGGCAGAAGTGGAAGTGGT
GGTGGTGGACTGGTGGGCATGTATGGAAAGTGTGACTTGAGTATTTTTACAATGAAAATCAGTAATCCATTAAATAACAAGAATATGCAATTGTAGATAA
ATGGGAGATGAGAAAATGGAAGAACTTACTGAGCTAATCACTCGTCATTAGGTCATCCATTACTTGTCTCAATCTATTCCTGCTTAATCGAGTTGGAGGC
TGGGAGTGCAACCGTCATATGATTCCTCTCCTCTGAACTAGCTAGGCTACGTTAGGCCAACTTCCAACCCAGAGTCTAACCCAAATCGATTTATACAAGG
ACATCAATTTTCACAGATTTACATTCGTCTTGCTGAGCTAATCACTTGTCTTCCATTTGACAAGTTCTGAGATCAAAGCTTATACGCTACGCAAAAGAGT
GCATTGATAACCAAGTTTACAACCTTTATCGTCTTAAGTTGCAAGATTTGGGTAAATCTGCACTTAGTTTCTACAGTAAGACTTTCTGCTTCACCACGAA
AGTGTAAATCTCTGCAAGACTTCTGCTTAACAAAAGCATACAAATGATTAAGCACGCTAACAATCTACATATCTAATGACCTCAAAACAGGTCCACCTCT
TCCTGAGTTCTTCCATGATTGGGTTCTCGGGGTTGATCTCCATGGTCTTCTTGGAAGACATGTAACCAGCCATGCTAGAGTCCCTAAGTGCTTGGGCCTT
CATGATCCTCTCCATGTTAGCAGACCAGCCATACTCACCAGTGACCAAACAGCAGGGAGAGTCAACAACACGGTCAGAGACGATAACCTTCTCAACCTTG
TCTCCAAGAACATCCTTGATGACCTTGCACAGACCCTCAAATTTCTCCTTTTGTTCCTCACTTTTCTTCTTCTCATCCTCGCTCTCATCAAGCTTAAGTC
CCTCCTTGGTGGCAGAGACCAACTTCTTTCCCTCAAACTCCTTAAGCTGACCAACTGCATACTCATCGATAGCATCAACCATGTATAGGACTTCATAACC
CTTCTTCTTCAGCTTCTCAACTCAACACATTTCTTAACAAGATTCTTCCTGATGA