Detailed information on CNT30281672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223508Chenopodium quinoaHordeum vulgare51.920.5790.24123forward
CNT30553994Chenopodium quinoaOryza glaberrima101.2733.7690.83240reverse complement
CNT30627892Chenopodium quinoaDaucus carota96.6237.692.58229reverse complement
CNT30153321Chenopodium quinoaPrunus persica75.1136.790.45178forward
CNT3054145Chenopodium quinoaAmborella trichopoda21.521.0990.251forward
CNT3025558Chenopodium quinoaPopulus trichocarpa89.4526.1791.98212reverse complement
CNT30150988Chenopodium quinoaBrachypodium distachyon101.2713.7590240reverse complement
CNT30577653Chenopodium quinoaOryza barthii101.2739.690240forward

Expression of CNT30281672

Peptides detected in this lncRNA

>peptide 1 (41 aa)
TKDRTNDVYLNSRRRCYIVGSHPSETTSVIGTSVDKRITLR*

>peptide 2 (63 aa)
MLHSGFSSFRDYECNRNIRRQKDHPKMIISWLLRTNQIRWFYFSIFLTCSYGTKTKKIEKISHS

Sequence

>CNT30281672
ACAAAGGATCGGACTAATGACGTATACTTGAATTCTCGACGTAGATGCTACATAGTGGGTTCTCATCCTTCCGAGACTACGAGTGTAATAGGAACATCCG
TCGACAAAAGGATCACCCTAAGATGATCATTTCATGGCTATTGAGAACGAACCAAATCAGATGGTTCTATTTTTCAATCTTTCTGACTTGCTCCTACGGA
ACTAAGACCAAAAAGATTGAAAAAATAAGTCATTCGC