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Detailed information on CNT30281153


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 4e-108

BLAST vs NONCODE:
NONSTUT001705, E-value = 1e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Chenopodium quinoaSetaria viridis4254.1782.42273forward
CNT30377662Chenopodium quinoaArabidopsis thaliana45.0832.4180.89293forward
CNT30728459Chenopodium quinoaCorchorus capsularis41.6943.7183.76271forward
CNT30709122Chenopodium quinoaGlycine max17.0831.5388.29111forward
CNT30238817Chenopodium quinoaBrassica oleracea73.5489.6879.08478forward
CNT30264134Chenopodium quinoaBrassica rapa63.5447.6479.42413forward
CNT30365925Chenopodium quinoaSorghum bicolor56.1541.181.92365forward
CNT3048947Chenopodium quinoaCucumis sativus36.3116.6879.66236forward

Expression of CNT30281153

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MPFPLVSRVCLHRPLPFTTTRCFFTLGILNFWCFPFTILFIIPIFRFNCCWVRNLFPLIPVLGLLIFWVGNSLWWDDSWFKIIT*

>peptide 2 (35 aa)
MIAGSKSSPKRRFALFFSSPSTKILTSLSGVKTAV*

Sequence

>CNT30281153
GGAGTATCAAGCTCAAAGTAGTTAGGGTTAGGAATTTCCTGTGGCTTCCAAATACCCTTATAGTTTGGGTTGTCAATTAGTGGAGCATGCCATTTCCCCT
TGTAAGCCGGGTTTGCCTTCATCGGCCTCTTCCATTCACCACAACCAGGTGCTTCTTCACACTTGGGATTCTCAATTTTTGGTGCTTCCCATTCACCATC
CTCTTCATCATCCCAATCTTCAGGTTTAACTGCTGCTGGGTCAGGAATCTTTTCCCTCTCATCCCAGTCCTCGGGCTTCTTATCTTCTGGGTCGGGAATA
GTCTTTGGTGGGATGATAGCTGGTTCAAAATCATCACCTAAAAGAAGGTTTGCCCTCTTCTTCTCCTCCCCGTCAACCAAGATTCTCACCTCATTGTCAG
GGGTCAAAACAGCGGTGTAAACATGAGTTAACTTGTCAGATGGGACAGATGGAGGAAATTTAAGATGGTGTTCAACATATTCTCCACTTTTTGGGTTCTT
GTGCTTCAGAATGAAGTGAACCTTGTTTGTTGACCCACATTTGTCAGGCCCAAACATGATAGAATAAGGTGACTCATTATCAAACTCCTTTGGCACCCAT
CCAGCTTCCTGAGGACGGAGATATTTCAAGTAGGCACCACCACATTCAAG