Detailed information on CNT3028051


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512879Theobroma cacaoJuglans regia64.1581.3784.27782forward
CNT30272593Theobroma cacaoChenopodium quinoa93.4447.3281.831139forward
CNT30200107Theobroma cacaoPisum sativum71.5398.4283.37872forward
CNT30709517Theobroma cacaoGlycine max75.899.4684.52924forward
CNT30156103Theobroma cacaoPistacia vera76.9579.2283.8938forward
CNT30637410Theobroma cacaoCapsicum annuum93.665.5781.511141forward
CNT3097291Theobroma cacaoSolanum tuberosum93.3673.982.341138forward
CNT3085936Theobroma cacaoVigna radiata93.8552.8982.341144forward
CNT30511508Theobroma cacaoSolanum lycopersicum88.0282.0382.111073forward
CNT30145547Theobroma cacaoMedicago truncatula88.2754.0784.21076forward
CNT30311152Theobroma cacaoCamelina sativa93.1970.4383.271136forward
CNT3073617Theobroma cacaoBrassica juncea89.9932.4781.591097forward
CNT30262720Theobroma cacaoBrassica rapa72.2770.7681.95881forward
CNT30605737Theobroma cacaoGossypium raimondii62.1899.4885.36758forward
CNT3066849Theobroma cacaoLeersia perrieri91.2283.2382.011112forward
CNT30626005Theobroma cacaoDaucus carota93.3634.3584.011138forward
CNT30423866Theobroma cacaoPapaver somniferum89.9985.7782.591097forward
CNT30706353Theobroma cacaoPrunus avium92.764.0283.541130forward
CNT3026527Theobroma cacaoPopulus trichocarpa71.5389.2583.72872forward
CNT30111644Theobroma cacaoFicus carica92.779.381.681130forward

Expression of CNT3028051

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSNVIVFPVKVFTNICIPPRKRNTK*

>peptide 2 (52 aa)
MSLCWSGGIPSLSWIFAFTLSMVSELSTSNVIVFPVRVFTKICIPPRRRRTK*

>peptide 3 (48 aa)
MQGGFLLDVVVCQSSPILQLLPSKNQPLLVWRDPLLVLDLCLHIINGV*

Sequence

>CNT3028051
CCCTTAAACACCGGCCAATAAGCAAAAACAATTCATTGAAGAACCAAACACCCTGACTGCTGCATCACTTCTAAACTTAAAAGCCACCACGAAGGCGAAG
AACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGAGTTCTCCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGA
GGGATCCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAGCTATCAACCTCCAACGTTATTGTCTTTCCAGTCAAGGTCTTCACAA
ATATCTGCATCCCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTTCCATCTTCAAGCTGCTTGCC
AGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAATGTG
ATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTTGCATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAA
GTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTGAATCTTAGCCTTGACATTGTCAAT
AGTGTCCGAGCTCTCTACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCATGCCACCTCGAAGACGAAGCACCAAATGAAGGGTG
GACTCCTTCTGGATATTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTTGT
CTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCCGTGAGAGTCTTGACAAAGATTTGCATACCACC
ACGGAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTT
TGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCTGTTA
GGGTTTTCACAAAGATTTG