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Detailed information on CNT30279731


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 7e-41

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30633374Chenopodium quinoaCapsicum annuum16.8125.6484.55220forward
CNT3091744Chenopodium quinoaSolanum tuberosum16.1220.5786.26211forward
CNT30543822Chenopodium quinoaBrassica napus7.3333.186.4696forward
CNT30573704Chenopodium quinoaVitis vinifera15.2825.6182.5200forward

Expression of CNT30279731

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MEKNFNSNKDHQSYIMLRYTIYMCKTKQINHKLGQALRSCNVTH*

>peptide 2 (40 aa)
MSSLSRCKHLLYHAYKKNPTKPAPLICQSAFNPATYKVYS*

>peptide 3 (50 aa)
MHIKKTLLNQHLLYVNQLLIQPHIKFTRELRGGGGGGFIKKKSLLNQHLS*

>peptide 4 (67 aa)
MHCTLPPLLAREVNSTLLFLVTGKAEVDFKPLNGATMLALAVLAVATEAAAFIKLEAMALCRLLLTL*

>peptide 5 (29 aa)
VAISANTSKLQLSNDKFNNTFENKRGSIT*

>peptide 6 (72 aa)
MTNSITHLRIREVPLLDMTLRPPFTSSHLIYKFTSLYIWTHSITPNNKNKNQTNILFQWKKTSIQTKIISHT*

>peptide 7 (36 aa)
MIRMKALGYAFLASSSSLTTWVGSVQPNIGNFHMVQ*

Sequence

>CNT30279731
GTAGCAATAAGTGCCAATACATCCAAATTACAATTAAGTAATGACAAATTCAATAACACATTTGAGAATAAGAGAGGTTCCATTACTTGATATGACCCTT
AGGCCTCCTTTTACATCAAGTCATTTAATTTACAAGTTCACTTCTCTCTATATATGGACCCACTCAATAACCCCAAACAACAAAAATAAAAACCAAACAA
ACATACTTTTTCAATGGAAAAAAACTTCAATTCAAACAAAGATCATCAGTCATACATAATGCTTAGATACACGATTTATATGTGTAAAACAAAACAAATA
AATCACAAATTAGGCCAAGCACTTAGATCTTGCAACGTCACTCATTGATCACTCGTAGTTCTCTGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGA
CGGAAGCTGTCGAATCCAATGATACGGATGAAGGCGTTGGGGTACGCCTTCTTGGCTTCCTCGAGCTCATTAACAACCTGGGTTGGGTCAGTGCAACCGA
ACATAGGCAACTTCCACATGGTCCAGTAACGGCCATCATAGTATCCTGGTGAGCTGTTGTGCTCACGGTACACAAATCCGTGCTACAATAGTATAAAAAA
AATACAAATAATGAGTTCGTTATCTAGATGTAAACATTTATTATATCATGCATATAAAAAAAACCCTACTAAACCAGCACCTCTTATATGTCAATCAGCT
TTTAATCCAGCCACATATAAAGTTTACTCGTGAACTAAGAGGGGGGGGGGGAGGAGGGTTTATTAAAAAAAAATCCCTACTGAACCAGCACCTTTCATAG
GTCAACAATCGTTATTCCAACAACATATAGGGGTTAACTCATGAAATAAGAGGGGGGGAGGGAGGGGCTTACCTCAAGCTCGAATTCTAAGCAGGGAACC
CAACCCTTGTTAAGAAGGTATTGGACTTCACTAAGCAAAGATTCAGTGGTTAGAGGTGGAAGGTAAGACAAAGTCTCAAACTTCTTCTTGCCAACAGGTG
GCCATACTTGCATGCATTGTACTCTGCCTCCATTGCTAGCAAGAGAGGTAAACTCAACGTTACTCTTCCTAGTAACAGGGAAAGCTGAAGTGGACTTCAA
ACCGTTGAATGGTGCAACCATGTTAGCCTTAGCAGTGCTGGCAGTGGCCACGGAGGCGGCGGCGTTCATCAAGCTAGAAGCCATGGCTTTATGTAGATTG
TTACTCACTCTCTAGCTCTTTTCCTTTAAGATTACTTGTTTGTTGAATGAGTAATATTGATGTATGTACGGTCCAATTTATAATAGTATGAAATAACTCA
AGCTAATCT