« Back to Chenopodium quinoa search


Detailed information on CNT30279009


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Chenopodium quinoaEucalyptus grandis96.1487.3482.571469forward
CNT30701438Chenopodium quinoaQuercus lobata77.7581.4381.731188forward
CNT30727227Chenopodium quinoaCorchorus capsularis43.9858.4984.67672forward
CNT30401729Chenopodium quinoaBeta vulgaris72.1980.5182.141103forward
CNT30709517Chenopodium quinoaGlycine max60.2799.1482.95921forward
CNT30156153Chenopodium quinoaPistacia vera58.5177.684.56894forward
CNT30568725Chenopodium quinoaActinidia chinensis68.2689.9181.981043forward
CNT3089455Chenopodium quinoaVigna radiata58.6473.6883.59896forward
CNT30538027Chenopodium quinoaBrassica napus87.1770.2582.211332forward
CNT30145248Chenopodium quinoaMedicago truncatula98.1776.41821500forward
CNT3061767Chenopodium quinoaArabidopsis lyrata57.9254.1983.05885forward
CNT30605389Chenopodium quinoaGossypium raimondii58.4490.5782.87893forward
CNT3066849Chenopodium quinoaLeersia perrieri72.9783.4681.431115forward
CNT30623044Chenopodium quinoaDaucus carota73.4356.983.961122forward
CNT30480747Chenopodium quinoaArabidopsis halleri57.2675.4382.4875forward
CNT30359535Chenopodium quinoaLactuca sativa57.4651.9884.74878forward
CNT30418468Chenopodium quinoaPapaver somniferum78.4799.5881.91199forward
CNT30572855Chenopodium quinoaVitis vinifera42.5469.2284.92650forward
CNT30642981Chenopodium quinoaCannabis sativa59.6981.2882.89912forward
CNT3032754Chenopodium quinoaTheobroma cacao72.3884.383.181106forward
CNT3024139Chenopodium quinoaPopulus trichocarpa57.481.6683.81877forward
CNT30120444Chenopodium quinoaCitrus clementina85.3481.7681.131304forward
CNT30330510Chenopodium quinoaDioscorea rotundata58.795.5383.61897forward
CNT30595410Chenopodium quinoaEragrostis curvula72.9781.7483.231115forward
CNT30174646Chenopodium quinoaVigna angularis58.0585.1285.01887forward
CNT30334108Chenopodium quinoaCynara cardunculus84.1655.2280.641286forward

Expression of CNT30279009

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVFTKICMPPLRRRTRWRVDSFWML*

>peptide 2 (37 aa)
MVSELSTSKVIVFPVKVLTKICIPPLKRSTRWRVDSF*

>peptide 3 (62 aa)
RPSSNCLPAKINLCWSGGIPSLSCILVLTLSIVSELSTSKVMVFPVKVLTNICIPPLKRSTK*

>peptide 4 (34 aa)
APVLQLLTSKNQPLLVRRNSFLVLYLSLDIIDSV*

>peptide 5 (30 aa)
MVFPVRVLTKICMPPLRRRTRWRVDSFWML*

Sequence

>CNT30279009
GCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGTG
TCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCATTCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACT
CCTTTTGGATGTTGTAGTCTGCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGGAATGCCCTCCTTATCCTG
AATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATTCCACCTCTT
AAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTT
GGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT
CTTCACAAAAATCTGCATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCAAGC
TGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATCGTATCAGAGCTTTCAACCT
CAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCATGCCACCTCTTAGACGAAGAACAAGGTGGAGGGTCGACTCTTTCTGGATGTTGTA
ATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACA
TTGTCAATCGTATCAGAGCTTTCAACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCATGCCACCTCTAAGACGGAGAACCAGGT
GGAGGGTCGACTCTTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATTAACCTCTGCTGGTCTGGGGGAATACC
TTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATCGTATCAGAGCTTTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGC
ATGCCACCTCTTAGACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAGA
TCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTT
TCCGGTAAGAGTCTTAACGAAGATTTGC