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Detailed information on CNT30278831


BLAST search results

BLAST vs Swiss-Prot:
sp|P85413|RGP1_PHODC, E-value = 4e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678686Chenopodium quinoaSetaria viridis25.1229.0282.18101forward
CNT30521866Chenopodium quinoaSetaria italica25.3725.1982.35102forward

Expression of CNT30278831

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RPQIKKQMLKNRVLENRRMMYNLNSCWLIYLASTLGNLVSAGLSSSHACTPSSSW*

>peptide 2 (39 aa)
MHVLLPQVGKWVASLAVVDVGKTSLHSQSQVITDDLGKP*

Sequence

>CNT30278831
CCGACCTCAAATCAAAAAACAGATGCTTAAAAATAGAGTTTTGGAAAATAGGAGAATGATGTATAATCTGAATAGTTGTTGGTTGATCTACTTGGCATCA
ACGTTAGGCAACTTGGTCTCAGCTGGGTTGAGCTCGTCCCATGCATGTACTCCTTCCTCAAGTTGGTAAATGGGTTGCTAGCCTTGCTGTGGTAGATGTA
GGGAAGACCAGTCTTCACTCCCAATCCCAAGTGATCACAGATGACCTAGGAAAACCATAACCCGAAGATAGATTGTCATTAAAATTTGAAAGACATGCTG
AATTACATACCATAGGAAACATCTGAAATTTGTTTTGATACATTAGATCGTTTTATAAAAATCAATTTCCTTCGAAAGAGCACCTGAAGGACAATGTTGT
AT