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Detailed information on CNT30277508


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTK7|PSBJ_OENEH, E-value = 3e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555951Chenopodium quinoaOryza glaberrima22.8523.6388.66194forward
CNT3060074Chenopodium quinoaArabidopsis lyrata27.4441.0287.98233forward
CNT30679284Chenopodium quinoaTriticum urartu21.5559.0389.07183reverse complement
CNT30354577Chenopodium quinoaLactuca sativa26.6225.4894.69226forward
CNT30149874Chenopodium quinoaBrachypodium distachyon22.9715.1389.74195forward
CNT30603960Chenopodium quinoaOryza punctata22.8515.3588.14194reverse complement
CNT30724340Chenopodium quinoaLupinus angustifolius27.563089.74234forward

Expression of CNT30277508

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MIIKKRIKWDLPLLCLSNSRGRKVPLSSYTFMSIPRLIKLLLTTEMSLIQNMNHKRKYLVNRSQEYQLQYLLSKEEFVQ*

>peptide 2 (39 aa)
EIVTSLDSLRQRLSRNFSFFEISPFFRFRLILFFLVLHV*

Sequence

>CNT30277508
CGAAATAGTAACGAGTCTTGATTCCCTTCGTCAAAGACTTAGTCGGAATTTTTCTTTTTTCGAAATTTCACCCTTTTTTCGTTTTAGATTGATTCTTTTT
TTCTTAGTATTACATGTATAAGGAGCGGACAAACTGAAAAAAAGAGAGAGGTCAATTTCTTGAACAAATGGAACTTCTTGCATTCTATTTAATCTAGAAA
AATAGAGCTTCTATTTGGTCATTCAATAAATCAATTGATTGCCTTTTTCTCTTTCTTTTAACTTAACAATTTAGGAAGGACCAATAAGTATGATCGAGGA
ATATATGTTCTGAATAACCAAATACACTTTTCAAAAACATCGAAAAAGGGGTCTGTTTTTCATTTATAGGAAAAAATTCGAATAAAAAATTATGATAATT
AAAAAAAGAATTAAATGGGACCTCCCCCTTCTTTGTTTGTCTAATTCGAGGGGAAGGAAGGTCCCGTTGAGTTCTTATACTTTCATGTCTATACCTCGAT
TAATCAAATTACTACTTACTACAGAGATGAGCCTAATCCAGAATATGAACCATAAAAGAAAATACCTAGTAAACCGATCACAAGAATACCAGCTACAGTA
CCTATTATCCAAAGAGGAATTCGTCCAGTAGTATCGGCCATTTACTCCACTTCCCTCCACATTTCATCAAGTGGTCGTGCTAGAGACATAAACAGTCATG
GATAATTATGAAATGAGGTCCTTCCGAATGGGATAAGAGAATTCCTACTCTATAATCGAATTCTATATTCTATCTATTTCTTTCCTTCTCTTTATTTAAT
TGAAAAAATAATTAGAAAATAAAACAGCAAGTACAAAAATGAGTAATAG