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Detailed information on CNT30277485


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-117

BLAST vs NONCODE:
NONMTRT000178, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Chenopodium quinoaCorylus avellana14.0725.5985.83120forward
CNT30375121Chenopodium quinoaArabidopsis thaliana23.9227.9182.84204forward
CNT30499549Chenopodium quinoaCoffea canephora35.461.6382.78302forward
CNT30615836Chenopodium quinoaSesamum indicum19.2342.8281.71164forward
CNT30729539Chenopodium quinoaCorchorus capsularis45.9658.3381.12392forward
CNT30524728Chenopodium quinoaPhaseolus vulgaris47.1374.4479.6402forward
CNT30486152Chenopodium quinoaOlea europaea41.0338.6782.86350forward
CNT30506399Chenopodium quinoaNicotiana attenuata35.0590.3384.62299forward
CNT30637312Chenopodium quinoaCapsicum annuum34.4768.3782.99294forward
CNT30222279Chenopodium quinoaHordeum vulgare16.7647.3581.12143forward
CNT30590847Chenopodium quinoaMusa acuminata36.4668.0580.39311forward
CNT3084565Chenopodium quinoaVigna radiata47.1323.7978.86402forward
CNT30457070Chenopodium quinoaSaccharum spontaneum17.1221.4480.82146forward
CNT30131528Chenopodium quinoaLolium perenne19.736.4481.55168forward
CNT3066796Chenopodium quinoaLeersia perrieri19.1141.979.75163forward
CNT30713695Chenopodium quinoaMalus domestica golden24.1545.6884.47206forward
CNT30595456Chenopodium quinoaOryza meridionalis17.9426.8480.39153forward
CNT30360575Chenopodium quinoaLactuca sativa41.7459.0481.74356forward
CNT30424172Chenopodium quinoaPapaver somniferum40.849.8684.48348forward
CNT30570592Chenopodium quinoaVitis vinifera26.7370.5979.39228forward
CNT30645151Chenopodium quinoaCannabis sativa46.7841.8780.7399forward
CNT3055709Chenopodium quinoaAmborella trichopoda25.2132.8783.26215forward
CNT30325711Chenopodium quinoaAsparagus officinalis37.410079.62319forward
CNT30594668Chenopodium quinoaEragrostis curvula17.9445.481.05153forward
CNT30603529Chenopodium quinoaOryza punctata17.942083.66153forward
CNT30332943Chenopodium quinoaCynara cardunculus31.6551.8283.33270forward
CNT3064271Chenopodium quinoaSelaginella moellendorffii15.7124.3681.34134forward
CNT3050773Chenopodium quinoaCucumis sativus30.1345.7384.82257forward

Expression of CNT30277485

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MWRCRYRGRGTRVVAREEGSESDELRLAMV*

>peptide 2 (40 aa)
MLMSILDDGDEEEDDGVREKINVAMPIPRTRNTSRCSRRR*

>peptide 3 (35 aa)
MAASEDQFRRHCCRVDYICEFGGKLRLSQGRRRRKG

>peptide 4 (88 aa)
MFVMNRGSRASQMIDLINLQQKRLNDVVSDQFKPRVSKMMHHILFPPSKEIINNNHTITSRNQTVHKMRPDKPGPTRHNYPQPFSFQP*

Sequence

>CNT30277485
ACCAATGGGGTTAACATTGCCCCAGTAAGTCTCCTTCTGAGGGTGCTCCAAAGGGTCACCATACACTTCACTAGTACTTGTTAGAAGGAACCTTGCACCT
ACTCTCTTTGCCAATCCTAACATGTTCAATGTTCCTACCACATTTGATATGATAGTTTTGACAGGGTTATGTTTGTAATGAACAGGGGAAGCAGGGCAAG
CCAAATGATAGATCTGATCAACCTCCAACAAAAGAGGCTCAACGACGTCGTGTCGGATCAATTCAAACCTAGGGTTTCCAAAATGATGCATCACATTCTC
TTTCCTCCCAGTAAAGAAATTATCAACAACAATCACACTATCACCTCTCGCAATCAAACGGTCCACAAGATGCGACCCGACAAACCCGGCCCCACCCGTC
ACAACTATCCGCAACCCTTTTCGTTTCAGCCCTAATGGGACCTTCCCAGATCTAAACCCATCACTGACCCGGCTATGGTGGGTCGGAATCAGCCGAGTTG
ACTCGGCGGTCAGGAACGATTCCCCGCCGATTGAATCATGCAGCATGTTGATGTCAATTTTAGATGACGGCGACGAAGAGGAGGACGATGGGGTGAGGGA
AAAGATCAATGTGGCGATGCCGATACCGAGGACGAGGAACACGAGTCGTTGCTCGCGAAGAAGGTAGTGAATCGGACGAGTTACGGTTAGCCATGGTTTA
AGAGGCTTTGGTGAGTCGTACTCGTCGGATTTGAGGTGGGATTCATGGCCGCCTCGGAAGATCAGTTCCGACGCCATTGTTGTCGGGTTGATTATATATG
TGAGTTTGGTGGTAAGTTGAGATTGAGTCAAGGAAGAAGACGAAGAAAAGGGA