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Detailed information on CNT30277302


BLAST search results

BLAST vs Swiss-Prot:
sp|P28807|RR16_SPIOL, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696488Chenopodium quinoaOryza sativa42.9822.1585.71245forward
CNT30727992Chenopodium quinoaCorchorus capsularis51.7545.3885.08295forward
CNT3047211Chenopodium quinoaPrunus dulcis19.1220.6488.07109forward
CNT30393155Chenopodium quinoaTriticum turgidum33.6829.6884.38192forward
CNT30435419Chenopodium quinoaAegilops tauschii42.2827.5786.31241forward
CNT30659176Chenopodium quinoaTriticum dicoccoides42.2873.2587.14241forward
CNT30610242Chenopodium quinoaGossypium raimondii50.770.1583.74289forward
CNT30229322Chenopodium quinoaAnanas comosus9.8223.7391.0756reverse complement
CNT30655380Chenopodium quinoaRosa chinensis60.8842.2184.15347forward
CNT30127870Chenopodium quinoaCorymbia citriodora31.0531.7888.14177forward
CNT30685543Chenopodium quinoaTriticum urartu29.6561.6885.8169forward
CNT30424174Chenopodium quinoaPapaver somniferum57.1962.8184.97326forward
CNT3058916Chenopodium quinoaAmborella trichopoda42.4611.7785.95242forward
CNT30150933Chenopodium quinoaBrachypodium distachyon29.4763.1684.52168forward
CNT30576782Chenopodium quinoaOryza barthii42.9823.8885.71245forward

Expression of CNT30277302

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VGLALHKKSTRIEKRRTKVLSNYNRIIFVFYLIN*

Sequence

>CNT30277302
GTTGGATTGGCACTACATAAGAAATCTACAAGAATAGAAAAAAGAAGAACAAAAGTTCTATCAAACTACAACCGCATTATCTTTGTTTTTTATTTGATTA
ATTGAACTTCGTTTGATTAAGCCGAAATTCTTTAAAAATCTCCGCCCTCTTTAAAATATCATAAACAGTTTCTGTCGGTTGAGCACCTTTTTCAAGAAAT
TCTAGAATAAGAGGAACATTTAAATAAGTTTGACTTTTTATCGAATCATAAAAACCCACCTTCTGCAAATCTCTTCCTTCTCTTCGGCACCGAACATTAA
TTGCAACGATTCGATAGACGGCTCGTTGCTTTCTACCACATCGTTTCAAACGAAGTTTTACCATAACATTCCCCAAATTTGGAACCGGTATGCGGTTAAT
TCAATTATGAAATCATGAATAGTCATTGGTTCAGTCAGAACAGCCAATACCTGGGTATGGAATATATCTTAAGTTATTATAAGATATTTTGAGTAATGCA
ATGCTTCTTTTTTTACAATAAAATAAAGGAAATATCCCTAAGAAATACAAATCCATGTTTCTTTTTGAGC