Detailed information on CNT3027612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515314Populus trichocarpaJuglans regia11.0728.5381.38188forward
CNT3071407Populus trichocarpaQuercus suber10.9579.1580.65186forward
CNT30380568Populus trichocarpaManihot esculenta11.4324.1679.38194forward
CNT3045720Populus trichocarpaPrunus dulcis12.373579.05210forward
CNT30717911Populus trichocarpaMalus domestica golden10.3721.6279.55176forward
CNT30155140Populus trichocarpaPrunus persica7.4240.6580.95126forward
CNT30573105Populus trichocarpaVitis vinifera10.930.5880185forward
CNT30706383Populus trichocarpaPrunus avium12.3733.4480210forward

Expression of CNT3027612

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSPIGNTKTSPGFKALVIRRLSPLAKFLQ*

>peptide 2 (31 aa)
KVQVSINGYPATSLFMKTNTTEEITMRTCEI*

>peptide 3 (51 aa)
MTKGLLANGFMSRLCSCWLKKTPLRLTVKTVGLWPLRCCCGGVGAVGLRED*

>peptide 4 (54 aa)
MRGAAADLCRVEKTRGRGGKLWLSGSVLAKGRVKLWLILGEEKGENPQNGRGGH*

>peptide 5 (34 aa)
MTGRGRWRPGLGFAGRGVSLFFSKRGGRRLASEK*

>peptide 6 (37 aa)
MGGSDPNTAFAIVITPGFWLLKPAKASALVFPTLNWK*

>peptide 7 (30 aa)
MAARSRVRWERGFSIFFKERGAAPGFREII*

>peptide 8 (29 aa)
KSSSEYQWISSNLFIYENKYDRGNNDENM*

Sequence

>CNT3027612
TAAAAGTTCAAGTGAGTATCAATGGATATCCAGCAACCTCTTTATTTATGAAAACAAATACGACAGAGGAAATAACGATGAGAACATGTGAAATATAATC
GGAAATCGCAGGGCTACTGCTCCGTGTCTTGTTCTTGTCCGACTAGAATGCTTTCTGAAGATAGTCGACAACCTTCTTGTCCAGTTGGAAGGCCTTGGCG
AGGACATCAGGATTAATGGGTGGATCCGATCCAAACACCGCATTCGCAATTGTAATTACACCAGGGTTCTGGCTGCTTAAGCCGGCGAAAGCAAGCGCTT
TGGTTTTTCCCACATTGAATTGGAAATGAATGAGTCCAATTGGAAACACAAAAACATCTCCAGGTTTTAAGGCTTTGGTGATTAGGCGATTATCTCCGTT
AGCCAAGTTTTTACAATAAATGTTTTTGTGTTTAGGCGAATAACATAAACTAGCAAACATTTAACAGAAATTTAAATACATGTTCAAACATGTAACAATT
ACAAAAAGGTCCCTAAAAAGTCTAGGAACTGCATAGGAGGCCCTCAGGAATTGTGGCGCAGTGCGGCGCGTCTTCTCCACGCGCCGCCGCGAAATCCAGA
GAGCTTGGGGAGTTCTGTAATGGCTTCCTTCCCTCTTCACCCTCCTATCGGTTGTGAGCAGCGCCATTACCTGTAAAACACCCAAAAATGCAACAAGCAA
GTCTGTTTTAGCCTTTTCTTTCACTGTTTTCGGATCTACTTCTCTCCCTTCTCCTTTTTCAGATCTGCTCCTCTCTCTTCAAATCTTTTTTTGTTTCCTC
TTCTTCTATTTCAGGTGGCCGGTGACATGACCAAGGGACTACTGGCGAATGGGTTCATGTCGCGTCTGTGCAGCTGCTGGCTGAAGAAAACACCGCTGCG
GCTGACGGTGAAGACCGTGGGTTTGTGGCCGCTGAGGTGTTGCTGTGGCGGTGTTGGCGCGGTGGGACTGAGAGAAGATTGAGCAGAAAACAACGGGGGC
TGCTGCCGTGTTCGGTCTGAGATGAGAGGAGCGGCGGCCGACCTCTGTCGGGTGGAGAAAACTAGAGGAAGAGGGGGGAAACTTTGGCTCTCTGGCTCTG
TTTTGGCCAAGGGAAGGGTGAAGCTTTGGCTGATTTTGGGAGAAGAAAAGGGAGAAAACCCCCAAAATGGGAGGGGCGGTCACTGAGAGGGAAATCGGGT
GAAGGCTGCCAGAGGAAAAGGAGGGCGGCTGTTGGTTTTTTTTGGAGGAGAAGGGAGTGTGTTTTGTGGGGTTCTCTCCTTTTGCAGGGAAGATGGAGAG
CCAAGCTTTTTGCTTGTTATGAGACAAGAAAACTAAAAGCTGAAAGGGGGTGGGGCGGCGGCTTGTCTGTGTATTTGTGGAAGATGGAAATGAGGGCTGT
GTGTTGATGACCGGGAGAGGGAGATGGCGGCCAGGTCTCGGGTTCGCTGGGAGAGGGGTTTCTCTATTTTTTTCAAAGAGAGGGGGGCGGCGCCTGGCTT
CAGAGAAATAATTTAGGTTTAGGGTTTATTTTTTTTGGCTGCCCTTTCCCCTCTAAAATTTTCTCCTCCCCCTGTCTCTCTAAATTTTTCTCCCCCTTAT
TCCAAATTTTCACTTTTCTTTATAGATTTTGTTATTTTTAATTGCTAGGTCCCGAAGCAACCTAAAAAATAAATTTATCCCTCAACTTTTCCTTTTCA