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Detailed information on CNT30276117


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 2e-72

BLAST vs NONCODE:
NONPOPT001132, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30199476Chenopodium quinoaPisum sativum22.4210.3187.88165forward
CNT30502101Chenopodium quinoaNicotiana attenuata24.7338.7289.56182forward
CNT3091075Chenopodium quinoaSolanum tuberosum44.786.8186.32329forward
CNT30173795Chenopodium quinoaTrifolium pratense21.8829.5491.93161forward
CNT30605213Chenopodium quinoaGossypium raimondii24.1858.9487.64178forward
CNT30427845Chenopodium quinoaPapaver somniferum28.1220.8986.47207forward
CNT3022534Chenopodium quinoaPopulus trichocarpa29.6267.4989.45218forward

Expression of CNT30276117

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICIFLGLRMISLSSAVFEAAAEMGEGKLGFLGIAWVFVEWVVVLVLLLQ*

Sequence

>CNT30276117
ATCCTCAACAAAACATAAGTTTGATAACAAAAGCTAAATACCCAAAAACTACTTTAACATAATAATTCGATTAAACCCCAAATCTCTGAATATCTGGAAA
CCTTGATTAATCAATCAATCAATCACCTCCAGCTTTCTGGTAAACATAGGTAAGACCACACTTACCACAATAATGGCGATCAAAATGGTTGGCCATGAAA
GTTCCAGCACCACACTCAGCATTAGGGCACTCCTTCCTCAACCTCTGAACTTTAGCTGAATCATCAACCTTGTAAAACTGAAGAACAGCAAGCTTAACCT
TCTTCTTCTTGTGCTTAATCTTCTTGGGCTTAGTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGG
TGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACG
AAGATCTGCATTTTTCTGGGGTTGAGGATGATTTCTCTCTCCTCTGCTGTTTTTGAGGCTGCTGCTGAAATGGGGGAGGGGAAATTAGGGTTTTTGGGGA
TTGCTTGGGTTTTTGTTGAGTGGGTTGTTGTGTTAGTGTTACTACTTCAATAGCCCATTGGACTTTTTCGATTGATTGGATAATGGATTGTGGAATGGAG
TTGTTGGTTTTCAATTGTTTTGCACTTTTTCATTTT