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Detailed information on CNT30276060


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 6e-92

BLAST vs NONCODE:
NONGMAT000778, E-value = 5e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532226Chenopodium quinoaEucalyptus grandis48.7442.7485.76309forward
CNT30316236Chenopodium quinoaCorylus avellana37.0751.288.09235forward
CNT30547574Chenopodium quinoaIpomoea triloba15.7728.1794100forward
CNT30512729Chenopodium quinoaJuglans regia53.7933.1486.22341forward
CNT30372986Chenopodium quinoaArabidopsis thaliana54.8934.0583.05348forward
CNT30379936Chenopodium quinoaManihot esculenta28.0853.2987.64178forward
CNT30405832Chenopodium quinoaBeta vulgaris34.5427.3185.84219forward
CNT30488117Chenopodium quinoaOlea europaea25.8733.6185.98164forward
CNT30711584Chenopodium quinoaGlycine max38.1734.3886.78242forward
CNT3045373Chenopodium quinoaPrunus dulcis50.1640.5688.99318forward
CNT30191206Chenopodium quinoaSecale cereale50.9526.3983.28323forward
CNT30300473Chenopodium quinoaTriticum aestivum48.1131.5182.95305forward
CNT30224354Chenopodium quinoaHordeum vulgare54.8967.0581.9348forward
CNT30395070Chenopodium quinoaTriticum turgidum43.3835.9584.73275forward
CNT30561656Chenopodium quinoaActinidia chinensis54.4224.6483.19345forward
CNT30510505Chenopodium quinoaSolanum lycopersicum55.6832.585.27353forward
CNT30552635Chenopodium quinoaOryza glaberrima38.1723.3186.36242forward
CNT30143941Chenopodium quinoaMedicago truncatula14.8320.9886.1794forward
CNT30441158Chenopodium quinoaAegilops tauschii48.1140.1882.95305forward
CNT30313757Chenopodium quinoaCamelina sativa38.3327.7187.24243forward
CNT3059659Chenopodium quinoaArabidopsis lyrata34.235083.87217forward
CNT30612508Chenopodium quinoaArabis alpina54.8913.7184.2348forward
CNT30135610Chenopodium quinoaLolium perenne22.5616.986.71143forward
CNT3014085Chenopodium quinoaZea mays37.2238.6984.75236forward
CNT30605685Chenopodium quinoaGossypium raimondii54.7345.4284.15347forward
CNT30204057Chenopodium quinoaHelianthus annuus14.5120.2685.8792forward
CNT30683923Chenopodium quinoaTriticum urartu48.1133.3382.3305forward
CNT30345702Chenopodium quinoaEragrostis tef45.936.0180.76291forward
CNT30596122Chenopodium quinoaOryza meridionalis50.9546.6884.21323forward
CNT30369654Chenopodium quinoaOryza glumipatula38.1727.586.78242forward
CNT30154011Chenopodium quinoaPrunus persica14.6733.192.4793forward
CNT30107537Chenopodium quinoaOryza longistaminata38.1726.3386.36242forward
CNT30332479Chenopodium quinoaDioscorea rotundata17.8239.9384.96113forward
CNT30100253Chenopodium quinoaOryza rufipogon38.1721.9686.36242forward
CNT30575986Chenopodium quinoaOryza barthii55.3629.7283.76351forward
CNT30497701Chenopodium quinoaDigitaria exilis32.0262.4687.19203forward
CNT30116094Chenopodium quinoaOryza nivara38.1727.586.36242forward
CNT30604019Chenopodium quinoaOryza punctata35.867.1686.78227forward
CNT3050899Chenopodium quinoaCucumis sativus9.7824.691.9462forward

Expression of CNT30276060

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MGSINLGLAVSWEAYMTLLAVGITCPPPLWMASAWRTTSQTSKQIPLMFSSAKAPSFEAHWKPATTESLISLRYWTPLHISTTMLG

>peptide 2 (58 aa)
MLGPEDPESLFPNDQTHTVGKLDQRLQLSKYLKIRRTRRQEGRCISSNTCPRFWLRTL*

>peptide 3 (35 aa)
MSTFLVKNTVDTTKSLFRSLDLNKIDGLHQSGLGS*

Sequence

>CNT30276060
ATGATGGAAACAGAAATAGATAGAACACCAAAGTAACTTCACAAACAACTCACAGATGAGATTATAGCTTGTCCTCAAACTCAGAAAGTGGGGTAATTGC
TTCCTTCAATCCCTTCCTCTTACGAATGTTTCCAACAAGGGCTGCAGCTTGTGATGTTGGGTCCAGAGGATCCTGAGTCATTATTTCCCAATGATCAAAC
ACACACTGTGGGAAAGCTTGACCAGAGGTTGCAGCTCTCAAAGTACTTGAAAATCCGAAGGACTCGACGACAGGAAGGTCGCTGCATTTCCTCAAACACA
TGTCCACGTTTCTGGTTAAGAACACTGTAGATACCACCAAGAGCTTGTTCAGGAGCTTGGATCTCAACAAGATAGATGGGCTCCATCAATCTGGGCTTGG
CAGTTAGCTGGGAAGCGTACATGACTCTCCTAGCGGTTGGAATAACCTGCCCACCTCCTCTGTGGATGGCGTCAGCATGGAGAACCACATCACAAACCTC
AAAGCAGATACCTCTCATGTTTTCTTCAGCCAAAGCACCTTCTTTTGAAGCCCACTGGAAACCAGCAACAACAGAGTCCTTAATTTCATTGAGATACTGG
ACTCCCTTACACATATCAACCACCATGTTGGGAC