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Detailed information on CNT3027583


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 6e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709039Populus trichocarpaGlycine max20.2915.585.5797forward
CNT3046524Populus trichocarpaPrunus dulcis19.2526.5984.7892forward
CNT3086369Populus trichocarpaVigna radiata20.515.5884.6998forward
CNT30145276Populus trichocarpaMedicago truncatula21.9714.1785.71105forward

Expression of CNT3027583

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTLQQGFTGGEPMVTLSNEPSKSAHTPNLSASLGHFPLEGLGVGFGIRRGATTSTSSG*

Sequence

>CNT3027583
AAATATATTTAAGGACATTGGAAGTCTTTGGGAACCTTCTTTCCACAGACATTGATAAGCAAGCTTAGGGAAATTGGAATGTTAAGGTTGATGCCCAAGA
TGTTAGCTTTGATGGCAGTGCAAAGACAAATAGCAGCCTCGAGATCAAGAAGGCCTTGAATGACACTGCAGCAAGGTTTTACTGGGGGTGAGCCAATGGT
GACGTTAAGTAATGAACCGAGCAAGTCAGCGCACACACCTAATTTAAGTGCATCCTTAGGGCACTTTCCACTGGAAGGGCTTGGTGTTGGGTTTGGGATT
AGGAGAGGGGCAACCACCTCCACAAGCAGTGGCTAGGGAAAAGAAGAGAAGGTTGAATGCAAGAAAGAGAGCAAGAGATGTGGTTCTTTTGGGAGCCATT
TCTCTCAAACGCTAATGGCTTTCTTTGAATTTAGTAGTTACAGTGCCTTCTAGCTTGCTAATAGAAGCTATAGAAGAG