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Detailed information on CNT30275526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Chenopodium quinoaSetaria italica24.8211.7681.75137forward
CNT30549812Chenopodium quinoaIpomoea triloba26.2727.281.38145forward
CNT30470142Chenopodium quinoaSaccharum spontaneum25.3618.7285140forward
CNT307034Chenopodium quinoaZea mays24.8217.3683.94137forward
CNT30346089Chenopodium quinoaEragrostis tef25.7225.2781.69142forward
CNT30597257Chenopodium quinoaOryza meridionalis25.9128.6685.31143forward
CNT30355824Chenopodium quinoaLactuca sativa25.7218.2184.51142forward
CNT30371492Chenopodium quinoaOryza glumipatula25.9126.6385.31143forward
CNT3053146Chenopodium quinoaAmborella trichopoda2521.981.88138forward
CNT30108688Chenopodium quinoaOryza longistaminata25.9125.4985.31143forward
CNT30104475Chenopodium quinoaOryza rufipogon25.9125.4485.31143forward
CNT30578401Chenopodium quinoaOryza barthii25.9125.5885.31143forward
CNT30581754Chenopodium quinoaEchinochloa crusgalli25.3618.382.86140forward
CNT30118085Chenopodium quinoaOryza nivara25.9126.7885.31143forward

Expression of CNT30275526

Peptides detected in this lncRNA

>peptide 1 (94 aa)
LTDFKAHNIKTTSSSTNRKIVEFSRKKFTGERKSHFRVSEHHLYKSNTMIYDVNSHLFRSFLSQKGGAADKRKTEDKPKEQRPKASENKPVMNE*

Sequence

>CNT30275526
GCTTAACCGACTTCAAAGCTCACAATATAAAAACCACCTCGTCGTCAACTAACCGCAAAATTGTCGAATTTTCCAGAAAAAAATTCACAGGAGAGAGAAA
ATCGCATTTTAGGGTTTCTGAACATCATCTTTACAAATCAAACACCATGATTTACGACGTTAACTCTCATCTCTTCCGTTCCTTCCTCAGCCAGAAGGGT
GGTGCTGCTGATAAGAGGAAAACAGAGGATAAGCCAAAGGAGCAGAGGCCAAAAGCTAGTGAGAACAAGCCTGTGATGAATGAGTAATTTTTGAGCTGAT
TGGCGGACAATTGTTTGATGTTAGCATGTAATAGCTGTAGTGACATGAATTGTTCCTTTGTGTAGCAGCTTATAATTTGAAATGGGATAAGAACTTTTAG
CTTGTTATTATGTGAGAAAAAGTTCTTGTGAGTTTGTTGATTTTGAAGCTTTTGAATATCTGGTTATTTCTTTCTGTTCTAACTTCTAAGACCCTGCCTC
ATATAGTCTTATACAATTGAAAAGAGAAATGGTGCAATTATTTAGTAACGGA