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Detailed information on CNT3027382


BLAST search results

BLAST vs Swiss-Prot:
sp|O50008|METE1_ARATH, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Populus trichocarpaSetaria viridis51.6539.6285.2250forward
CNT30521178Populus trichocarpaSetaria italica21.0720.8683.33102forward
CNT30513228Populus trichocarpaJuglans regia66.9441.6590.74324forward
CNT30375849Populus trichocarpaArabidopsis thaliana65.0828.1282.54315forward
CNT30504596Populus trichocarpaNicotiana attenuata49.3838.8687.03239forward
CNT30282Populus trichocarpaZea mays18.1828.9582.9588forward
CNT30650401Populus trichocarpaRosa chinensis64.2635.386.82311forward
CNT30211728Populus trichocarpaHelianthus annuus25.2146.2184.43122forward
CNT30129159Populus trichocarpaCorymbia citriodora17.5624.7884.7185forward
CNT30721247Populus trichocarpaTriticum spelta51.6547.6281.2250forward
CNT30367469Populus trichocarpaSorghum bicolor65.2945.3483.54316forward
CNT30148668Populus trichocarpaBrachypodium distachyon36.9858.6985.47179forward
CNT30118099Populus trichocarpaOryza nivara51.4530.5584.74249forward

Expression of CNT3027382

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MFLRAGFTSVYLRVLSPQSGLTHKMFVSSTASILLILSAISSVDGILGEWIS*

Sequence

>CNT3027382
GATATCATAGACCCACAGTTATTCAAACAATAAATTCCTTTTTTGTTTGAATAAAATTCAATGGACAAGGGAAGATTAAACTCTCAACCTTCTATGTTTT
GAATTTTGAATAAAATTCATTAGACCATGGAAGATTGAACTCTCAACATATCCTGGTTGGCTCACTTGGCACTGGCAAGCTGGGTGCGGAGCAGCTTGGC
AGCATCAACCATGTTCTTGAGAGCTGGCTTCACCTCGGTGTACTTGCGAGTCTTGAGTCCACAATCAGGGTTAACCCATAAGATGTTTGTCTCAAGCACT
GCAAGCATCTTGTTAATTCTGTCAGCAATCTCCTCGGTTGATGGTATTCTAGGAGAGTGGATATCATAGACACCAGGGCCAATTCCAGCACCATATTTCA
CTCCCTCACGGAAGACTGAGAGAAGCTTTTCATCGGAGCGAGAGTTCTCTATGGTGATCACATCAGCATCCATGTCGATAATTG