Detailed information on CNT302730


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 6e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555545Zea maysOryza glaberrima39.8730.4784.92252forward
CNT30365555Zea maysSorghum bicolor46.6860.5792.2295forward
CNT30597241Zea maysOryza meridionalis39.8728.9383.33252forward
CNT30371468Zea maysOryza glumipatula39.0821.4683.81247forward
CNT30578501Zea maysOryza barthii39.8722.4684.92252forward
CNT30118025Zea maysOryza nivara51.272882.41324forward

Expression of CNT302730

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRAHTWYIIDQFLARLLAGSLASCSLQRRCM*

>peptide 2 (39 aa)
MHRILPPLLTLPRLLVLRRATGRLAADLRPWNGATAVADE

>peptide 3 (50 aa)
MKLTHCVCLTLSKPMTRWKASGYAAMASCSSLYTCVASVQPNMGSFHMVQ*

Sequence

>CNT302730
CCGCTCAACAGGAGGAGGCATGGCCATGGGTCGATCTAGCCACGGTCTCTACTCGCTGCCGGGGGGCTTGTAGGCGATGAAGCTGACGCACTGCGTCTGC
CTGACGTTGTCGAAGCCGATGACGCGGTGGAAGGCGTCCGGGTACGCGGCGATGGCCTCCTGCAGCTCCTTGTACACCTGCGTGGCGTCGGTGCAGCCGA
ACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTAGCACGGGGAGGTGGAGTTCTCGCGGTACACGAACCCGAGCTTGCTGAACTCGAGGCA
GGGTATCCAGCCGTTGCGCAGCAGGTAGTCCACCTGCTTCAGCAGGTACGACAGCGTCTCGAACTTCTTGTTGCCGTAGGCCGGCCACACCTGCATGCGC
GCACACACATGGTACATCATCGACCAGTTCCTAGCTCGATTGCTGGCTGGCTCACTGGCTAGCTGCAGCCTGCAAAGAAGATGCATGTGATGGAGGAGTT
ATTATTACCTGCATGCACCGGATCCTTCCGCCGTTGCTGACGTTGCCGAGGCTCCTGGTGCTGCGGCGGGCGACGGGGAGGCTGGCGGCGGACTTGAGAC
CCTGGAACGGGGCGACGGCGGTTGCCGACGAG