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Detailed information on CNT30272810


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Chenopodium quinoaSetaria viridis68.2813.5690.16254forward
CNT30556102Chenopodium quinoaOryza glaberrima29.8418.1492.79111forward
CNT30627901Chenopodium quinoaDaucus carota44.0914.0293.29164forward
CNT30646246Chenopodium quinoaCannabis sativa16.420.6895.0861reverse complement
CNT30318962Chenopodium quinoaAsparagus officinalis73.1213.0593.75272forward
CNT30148621Chenopodium quinoaBrachypodium distachyon28.4927.3293.4106forward
CNT30116753Chenopodium quinoaOryza nivara29.8427.6892.79111forward
CNT30726606Chenopodium quinoaLupinus angustifolius41.413.0693.51154forward

Expression of CNT30272810

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRRKKKALRDPPGPTLDTLRSFFKPAPISSLEKKLQVLPKKGFRVLQKEFEDPFAKLLPFRV*

>peptide 2 (55 aa)
NHRTYGPTNSERINRFLFGSDSSFPNAAYNSPLYCALQVCLFPPSSLLPWQVFVK*

Sequence

>CNT30272810
TAAATCATCGCACCTACGGTCCAACCAATTCGGAGAGAATCAATAGATTCCTTTTTGGGAGCGATTCATCCTTCCCGAACGCAGCATACAACTCTCCGTT
GTACTGCGCTCTCCAAGTGTGCTTGTTCCCCCCTTCTTCCTTATTACCGTGGCAAGTCTTTGTGAAATAACTCTGATGAGAAGAAAAAAGAAGGCATTAA
GAGACCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGCTCCCATTTCGAGTCTAGAGAAAAAATTACAAGTTCTTCCTAAGAAAGG
ATTTCGAGTCCTCCAGAAAGAATTTGAAGATCCTTTTGCAAAATTGCTCCCATTTCGAGTCTAGAGAAAAAA