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Detailed information on CNT30272552


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT001646, E-value = 2e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Chenopodium quinoaSetaria viridis25.679.3195.34322reverse complement
CNT30641615Chenopodium quinoaNymphaea colorata34.7478.8892.22437forward
CNT30730494Chenopodium quinoaCorchorus capsularis70.43100.6893.91886forward
CNT30294119Chenopodium quinoaTriticum aestivum17.8982.4296.89225reverse complement
CNT30220355Chenopodium quinoaHordeum vulgare22.5894.9895.42284forward
CNT30396824Chenopodium quinoaTriticum turgidum60.4175.4789.74760reverse complement
CNT30569398Chenopodium quinoaActinidia chinensis79.7351.3393.121003forward
CNT30511593Chenopodium quinoaSolanum lycopersicum30.3758.6886.13382forward
CNT30258490Chenopodium quinoaAvena sativa13.1222.8583.03165forward
CNT30657980Chenopodium quinoaTriticum dicoccoides28.4687.7595.53358reverse complement
CNT30720843Chenopodium quinoaTriticum spelta3.9723.2610050forward
CNT30620564Chenopodium quinoaCajanus cajan60.9714.8292.96767reverse complement
CNT30354697Chenopodium quinoaLactuca sativa27.6649.2997.99348forward
CNT30481523Chenopodium quinoaChara braunii5.1727.0896.9265reverse complement
CNT3036965Chenopodium quinoaCucumis melo58.19100.5593.44732forward
CNT30150154Chenopodium quinoaBrachypodium distachyon69.3276.2290.02872forward
CNT30497700Chenopodium quinoaDigitaria exilis18.7643.1491.53236reverse complement
CNT30604015Chenopodium quinoaOryza punctata34.3489.4491.2432reverse complement
CNT30174498Chenopodium quinoaVigna angularis31.5678.6189.92397forward
CNT30115272Chenopodium quinoaEutrema salsugineum16.2241.9890.69204forward

Expression of CNT30272552

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWVAKCGADNC*

>peptide 2 (29 aa)
MKKPKTLPSLSIYLYPKDGRAEDFGVPSS*

>peptide 3 (41 aa)
RPPSGGPKPSVRYHSGRARILTLCQYLRAKGQSQVDSFYGV*

>peptide 4 (50 aa)
MQLRHPNRPTDLNLVPTWPDQFDQALAIQSIFIVQFFDNTKKPLVNSLTT*

Sequence

>CNT30272552
AAAGGCCCCCTTCCGGGGGGCCCAAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGTACCTACGGGCCAAGGGACAATC
TCAGGTAGACAGTTTCTATGGGGTGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGACCGGACGGAGATTGGCCCTCGAGTGCAAAG
GCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGATGGTGCCGAGTGGAAGGGCCGTCGCTCAATAAA
TAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGACTGT
AGTATGTTCCAAGGGTTGGGTTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTA
GAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTTTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTG
CGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCTACTTCCCCGTCACTGCCGATAGCACAGCTGAG
GCACTGACGGGTTCTCTGCCCCTGAGGGGTGAGCGACAGAAGTTTGGAAAGAGAAGGTCACGGCGAAACGAGCCGTTTATCATTACGATAGGTGTCAAGT
GGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCCACAGACTTGAACCTTGTTCCTACATGGCCCGATCAATTCGATCAGGCACTCGCCATC
CAATCCATTTTCATTGTTCAATTCTTTGACAACACGAAAAAACCATTGGTCAACTCTTTGACAACATGAAAAAACCAAAAACCCTGCCCTCCCTCTCTAT
CTATCTCTATCCAAAAGATGGAAGGGCAGAGGACTTTGGTGTCCCCTCCAGTTAAGAATTGGGGCCTCACAATCACTAGCTAATTTGCCTTTCTCTCATG
CCTTTCTTAGTTCGTGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGAT
ACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAAC