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Detailed information on CNT30272397


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691007Chenopodium quinoaOryza sativa4.7124.3787.3687forward
CNT30730430Chenopodium quinoaCorchorus capsularis6.8732.4886.61127reverse complement
CNT30163195Chenopodium quinoaPistacia vera4.4935.6289.1683forward
CNT30191576Chenopodium quinoaSecale cereale4.7122.1987.3687forward
CNT30297822Chenopodium quinoaTriticum aestivum4.7121.1287.3687forward
CNT30356763Chenopodium quinoaLactuca sativa6.5522.3288.43121forward
CNT30101172Chenopodium quinoaOryza rufipogon4.7123.7187.3687forward

Expression of CNT30272397

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MQLSYPYTAATGDEGPVLLRFWQNKTEQSRFH*

>peptide 2 (30 aa)
MRWSRSVFFFFFLFFLSFQSFSLYFDSYYQ*

>peptide 3 (40 aa)
LYGEQRFIVLFIFLGLTLTRQFEMIQFRIFLGRYRKGIGM*

>peptide 4 (32 aa)
MVRGAFLGTAFRKLGDDSRAALVPFWTSPTTN*

>peptide 5 (51 aa)
MQIEEEGERLYYTSRMHSYASSMPFPYWDVSRTELGSGSWVRLGYVPMVYP*

>peptide 6 (46 aa)
MMYPFLKILILSYPVLVFVPIFVPFRFLCNLATHTRQLRETKALFF*

Sequence

>CNT30272397
ATTTATACGGAGAGCAAAGGTTCATTGTTTTATTTATTTTTTTGGGACTCACACTAACCCGTCAATTTGAGATGATACAATTCAGGATTTTCCTTGGGAG
GTATCGGAAAGGAATTGGAATGTAATAATATCGATTCATGTAGAAGAAAAGGTTCTCTATTGATTCAAGCGTTGTGCCCTTTAATAACAAATACAGAGCA
TCACAATATTGGGCCCAGGGCGGTTGCCCCACCTGCTTTGGTCCAGCGACGACCCTGATTGTGAAGCTTAATTCTTTAAGTGTAGTACTTTTTGTCTGTA
TAATGCACTATGTTAGAATTTGGTCACTGTATTTTGATCATTTGATGCCTTTACTCGCTTTTCATCTTTGATATTTATACATTCATTAAAAATGGTGAGA
GAAGTGGAAGAGCCTAAATAATGTTGTTTACTTGCAGGTAAGGTGAACTTAAAATAAAATAAAATATTGTTGCACCAAATATAATGTTGTAAGCAAAATG
AAGGATGCAACTAAAGCCCACATGGACCACAAGTCAACGTTCAGCACATTAATAAAGTGATGGGTTTTAACTTTCAAACCCATTACTTCTAGGGACGGAA
TGTTTGGTTTACTAAGTTAGAATGGGTTGGAATGGATTTTGAATTCATTTTACGGAGTATGATTTTATCTGTTTGATTGGACTATTTAACTATGGAATCT
CATACTTGGGGGATTCTAGCTCCACCCCATTCCATTGGAATCTCATACTCACCTTCCCTCTAAAGATTTATACTCCATACTATGAAAATCCATTCTATGG
TTAATCCAGACAACTTTAAATTGGTATGGGATATATAATTCATACTATTGAAATATGATAATCCATTCTATGGTTAATCTAAACAATTTTAAATTGGTAT
AGAATCCATACTACCGAAATATGAGAATTCATACCAATCCATTCCAGATCAATAAACCAAACTATCCCTAAATAACAAGAGGAGCAGCCGCACAAAAGAA
AGGAGGAGAAAACCTAAACCCTTAAACTACCCTGCTGTACTTCAAGAGATGCAGATCGAAGAAGAAGGAGAGAGGTTGTACTACACATCAAGGATGCACA
GTTACGCCTCCTCTATGCCATTTCCGTACTGGGACGTATCCAGGACGGAACTGGGTTCGGGTAGTTGGGTACGCCTAGGATACGTCCCCATGGTGTACCC
TTGAAAAATGGTACGGGGAGCCTTTTTGGGTACGGCTTTCAGGAAACTTGGGGATGATTCGAGGGCGGCTTTGGTACCTTTTTGGACGTCCCCTACTACA
AATTGAAGCCCAACACTAAAAAAAAAAACCTCTTTAATTACTTACATTTGCGATTTGAATACCCTAAATCTTAAAATACACATGCGATGGAGTAGATCGG
TTTTTTTTTTTTTTTTCCTTTTTTTCCTTTCTTTTCAATCATTTTCTTTATATTTCGATTCCTACTATCAATAGTTTTTACTACTTTTCTTTTTTTTTTT
TTCCCCCTATTGTGATTTTAATCATTAATGTTGTTATGTTGTGAATTTTTTTGTTTATTTTTTTTAAAAAAAAACCTTTTTATGGATTTATTATTTTGCT
GAATTTTTTTTTTGGCGTATCCATGATGTACCCGTTTTTGAAAATTTTGATTTTGTCATATCCCGTCCTCGTATTTGTACCCATTTTTGTACCCTTCCGT
TTTCTATGCAACTTAGCTACCCATACACGGCAGCTACGGGAGACGAAGGCCCTGTTCTTTTGAGATTCTGGCAGAATAAAACAGAACAGAGTAGATTTCA
TTAGAGCAGAGCATATTTCACTGCTGCTACTACTACTACTACTACTAC