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Detailed information on CNT30272360


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30205883Chenopodium quinoaHelianthus annuus8.6232.4498.6373reverse complement

Expression of CNT30272360

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MCSCTPNSFILLLTRSTQVIYGWLLEMKFLRYVS*

>peptide 2 (47 aa)
MPFYLVLYCYVFLYAQFFHIAPNSLYPSHIWLVIGDEVFKICFLNIC*

>peptide 3 (43 aa)
EIHRNFFDVSWEVKISMLIPKKFNVAAGIRAQVSTATTWNSNH*

>peptide 4 (57 aa)
MWLLGFEPRSPRPQRGILTTKLQPLLYLIININYNCRKQSTYFTKDFNSTDEKFQKF*

Sequence

>CNT30272360
GAAATTCATAGGAATTTCTTTGATGTTTCGTGGGAAGTAAAAATTTCCATGTTAATTCCAAAAAAATTCAATGTGGCTGCTGGGATTCGAGCCCAGGTCT
CCACGGCCACAACGTGGAATTCTAACCACTAAACTACAGCCACTTCTTTATTTAATAATCAATATAAATTATAATTGTAGGAAACAAAGTACGTATTTTA
CCAAGGATTTTAATTCGACCGATGAGAAATTCCAGAAATTTTAGAAGAATCAACTGACAAACGATCGGTGATCAAAATGCTTAGGAACTATGGAGATCAA
GCTAGAGATCGCTAATCTTTATTGCTTTTGTATTTTCAAAATCTGAGAAACATGAAGCAGGACTTGTCAAATTATTTTAGTCACAATATTTGAAGAGATA
GTATGATGATGCTAACTGGATTCCTACTTTTCTGAGTGATTTTTGTTGATTAGGCTCGAAGCAGATATTCCCATAATATCTAGCATTCTAGCTTACGTTT
ATTTTGAAGGGATATGTATGATGTCTATTTTACTTTATAAGCTTACCATGGGGGTGACAACTACAACATTATCAGAGCTATAAGCTCAATGATAGAGTTG
GCTACATGAACCAAAATTTTATAGCTGTCAACCAAGATACTCTCCCTCCATGCCCTTCTATCTAGTGCTATACTGCTATGTGTTCCTGTACGCCCAATTC
TTTCATATTGCTCCTAACTCGCTCTACCCAAGTCATATATGGCTGGTTATTGGAGATGAAGTTTTTAAGATATGTTTCTTAAACATTTGTTGATCAAGGA
ACTTATTTTATCTCAAGAATGTATGGCGTTATACACTTATATCTTAA