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Detailed information on CNT30272277


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 2e-86

BLAST vs NONCODE:
NONCQUT008675, E-value = 2e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525464Chenopodium quinoaPhaseolus vulgaris71.0455.5885.99314forward
CNT30505987Chenopodium quinoaNicotiana attenuata50.6868.0985.71224forward
CNT30287202Chenopodium quinoaTriticum aestivum65.6140.3385.86290forward
CNT30509820Chenopodium quinoaSolanum lycopersicum47.5193.7585.71210forward
CNT3052982Chenopodium quinoaAmborella trichopoda70.8123.9385.62313forward
CNT3037774Chenopodium quinoaCucumis melo80.5446.0588.76356forward
CNT30100761Chenopodium quinoaOryza rufipogon64.2549.5686.27284forward
CNT30579541Chenopodium quinoaEchinochloa crusgalli5038.3787.78221forward
CNT3050685Chenopodium quinoaCucumis sativus77.8376.4485.17344forward

Expression of CNT30272277

Peptides detected in this lncRNA

>peptide 1 (96 aa)
IMMTWAVKLAASLAGSFLESEATKPRLRSLTATFLTLNPTLSPGRASGRDSWCISTDLTSVVSPVGPKVTSIPGFNTPVSTRPTGTVPIPPILYTS*

>peptide 2 (55 aa)
NDDLGSEVSCFLGRVVLGVRSNETTLEILDSNILNIEPNVVTGESLWKRLVVHLN*

Sequence

>CNT30272277
ATAATGATGACCTGGGCAGTGAAGTTAGCTGCTTCCTTGGCAGGGTCGTTCTTGGAGTCAGAAGCAACGAAACCACGCTTGAGATCCTTGACAGCAACAT
TCTTAACATTGAACCCAACGTTGTCACCGGGGAGAGCCTCTGGAAGAGACTCGTGGTGCATCTCAACTGACTTAACTTCAGTGGTCAGTCCAGTGGGACC
GAAGGTAACAAGCATACCAGGCTTCAACACACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATACCTCCAATCTTGTACACATCCTGAAGTGGAAGA
CGGAGGGGCTTGTCTGAGGGCCTCTTTGGCTCGTTGATCAAGTCAAGAGCCTCAAGAAGGGTTGGTCCTTTGTATGAGGAGACTTCCTTGACGATTTCTT
CGTACCTACCCTTAGAGTACTTGGGAGTGGTAGCATCCATCT