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Detailed information on CNT30272010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M3J5|TI214_SPIOL, E-value = 3e-87

BLAST vs NONCODE:
NONCQUT000004, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730320Chenopodium quinoaCorchorus capsularis44.828.5781.59277forward
CNT30237505Chenopodium quinoaBrassica oleracea39.3211.5783.13243forward
CNT3062643Chenopodium quinoaArabidopsis lyrata41.595.6982.49257forward
CNT30321088Chenopodium quinoaAsparagus officinalis39.3225.9383.95243forward

Expression of CNT30272010

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MYIWLKQFPNNYFTSLNTHGTYDYFSTKIRLL*

Sequence

>CNT30272010
AAGGAAATAATATCTTTATCTGAATACCATCTGTTAACCAGTTTTTAGGAAATTCAGTTTCTGATAATTGAACGCCGTTATAGGTGCATTTAACATGCAT
TTCGCTATTCCACTCTTTGAAATCATCCGACCACTCGGGTCGTTGGAATAATAACAGACGACTGAAATTTTTTGCTATTATCAATAAAGGCAATAGAATA
TATTTTCTAAGAATTGACTGAGTTATTAGCATCAAACCTCTTATTATTTGAGCAAATGGAATAGTATCCCAGGCTTCGGCTATTTCTATTCGTATGTTTT
CTTGGCTTTTGTCGTCGTTTTTATTGTATTTTTTATTTTTATTTTCCTCCTTCAATTCTTCGTTTTTATAATAAGAAATCCGCAATTCTGAGTTTTGTCC
CAGACAATTTTTTTAAATCCCTTTAATTAATCCGGAAAAAGTAGCCGAAAAAAAAGAGGATTTATCTATTCTGTCTAAAAAAAGCGGAGAATGTATATTT
GGTTGAAACAATTCCCAAATAACTATTTTACGTCTTTGAACACGCATGGAACCTATGATTATTTCTCGACGAAAATCAGATTGTTGTGAATAACGTATCA
AAGAAACTTCACCTGCTT