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Detailed information on CNT30271983


BLAST search results

BLAST vs Swiss-Prot:
sp|P06453|ATPF_SPIOL, E-value = 6e-63

BLAST vs NONCODE:
NONCQUT006914, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020344Chenopodium quinoaCitrullus lanatus25.1314.5386.73294forward
CNT30730672Chenopodium quinoaCorchorus capsularis18.5521.6887.1217forward
CNT30632292Chenopodium quinoaVigna unguiculata36.9214.485.42432forward
CNT30710758Chenopodium quinoaGlycine max17.0966.8990200forward
CNT30160646Chenopodium quinoaPistacia vera6.1531.1787.572reverse complement
CNT3095993Chenopodium quinoaSolanum tuberosum36.9210.7987.73432forward
CNT30223113Chenopodium quinoaHordeum vulgare13.6851.6190.62160forward
CNT30172743Chenopodium quinoaTrifolium pratense4.4425.1290.3852reverse complement
CNT30353938Chenopodium quinoaEragrostis tef21.5443.3787.3252forward
CNT30367017Chenopodium quinoaSorghum bicolor12.7438.2187.92149reverse complement
CNT30371010Chenopodium quinoaOryza glumipatula21.1127.0286.64247forward
CNT30551824Chenopodium quinoaOryza brachyantha20.6899.1880.58242forward

Expression of CNT30271983

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MNTSNAVTHLKYGAGIYNLYFSIISFNTFTDNFANFVCSNGCHESFLIRFSFGKRTIQSP*

>peptide 2 (68 aa)
MKVDYLSIHFKTFMTPSRTKLESFNSFGSHAQLLQLFMANFHIFFDCNEPILPSLFICEKKKPIINQD*

>peptide 3 (47 aa)
MAFPRSSSEFRIVFKILCFRLSNKSLNESGLSFHSFQNIHDPFPNQT*

Sequence

>CNT30271983
CGGTTTTAAAAATTTTGGAGGTTTCGGAGAACTTTGTTGAAAAGCCTTGAGATTTTAGGGGATACATCTCAGGGTAATATATTGCCGTTTGAAACCATAA
ATGGTCATGGTTTAGCTAGAGCATTTATAACACGACCCAAATAAGCCTCACTCACGGGTATCTGAGCAATTCTTCCAGTTGCTTTTACAGAACTTCCTTC
TTGTATCATCAAACCGTCACCCATTAATACAACACCAACATTATTTGATTCCAAAATCAGAGCAATACCTATTGTCCTCTCTTCAAATTCTACTAACTCC
CCTGCCATTACTTCATCAAGACCATGAATACGAGCAATGCCGTCACCCACTTGAAGTACGGTGCCGGTATTTACAACCTTTACTTCTCGATTATATCCTT
CAATACGTTCACGGATAATTTTGCTAATTTCGTCTGCTCGAATGGTTGCCATGAGTCTTTCTTAATTCGTTTTTCTTTTGGAAAAAGAACTATTCAGAGT
CCCTAGAGCTCCTTGTAAGGCTTGTTGAAAAACCCGTTGTCGGACTTGATTAATCGCTTTTTGTTGTTCAAACTGAATGGTTTCGTTTTTATAATTTTCG
AATTGTTCTAAAGTTTTATAAGTTGAATTAATCAAATTCATTTTTTCTCGTTCTATTTCAGAATATCCATTCACTCGAAACTGATCCGCGTCTATTTCCA
CTTTCTTTAAGCGAGCCCTGGCTTTTTCCAACTGTTCAATGGCCTTTCCGCGTAGTTCGTCTGAATTTCGAATAGTATTCAAGATCCTCTGTTTTCGATT
ATCTAATAAATCACTTAATGAAAGTGGATTATCTTTCCATTCATTTCAAAACATTCATGACCCCTTCCCGAACCAAACTTGAATCTTTCAATTCATTTGG
CTCTCACGCTCAATTACTTCAATTATTTATGGCAAATTTCCATATCTTTTTTGACTGTAATGAACCTATCCTCCCTTCTCTGTTCATATGCGAAAAAAAG
AAACCGATCATTAATCAAGACTAGAAAATTCGGAGGACTCTTCTAACCCAAACAAAAATAGAAAAATAGATAAGTCAGCAAAGTTGTTTTTTTTTATTCA
AATCCAAAAATTTGTGTTACTTTATATGTAGGTCATCGACTTGGCCTTTGGCATTTATTTCCTTAATAGT