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Detailed information on CNT3027145


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550295Populus trichocarpaIpomoea triloba65.5391.5597.011072reverse complement
CNT30519140Populus trichocarpaJuglans regia76.7743.0197.051256reverse complement
CNT30730396Populus trichocarpaCorchorus capsularis78.3680.3896.571282reverse complement
CNT3072442Populus trichocarpaQuercus suber71.1567.0594.241164reverse complement
CNT30507912Populus trichocarpaNicotiana attenuata76.2884.3896.071248forward
CNT3047192Populus trichocarpaPrunus dulcis63.9430.8296.371046reverse complement
CNT30585954Populus trichocarpaMusa acuminata76.4779.9994.321251reverse complement
CNT3089434Populus trichocarpaVigna radiata69.8771.394.231143reverse complement
CNT30234560Populus trichocarpaBrassica oleracea68.4658.7395.181120forward
CNT30312195Populus trichocarpaCamelina sativa68.8345.1595.831126forward
CNT30265942Populus trichocarpaBrassica rapa78.2469.9595.161280reverse complement
CNT30206613Populus trichocarpaHelianthus annuus72.5668.396.711187reverse complement
CNT30356368Populus trichocarpaLactuca sativa74.0293.5996.041211reverse complement
CNT3035823Populus trichocarpaCucumis melo76.8346.396.741257reverse complement
CNT30334961Populus trichocarpaCynara cardunculus70.7854.5293.781158reverse complement

Expression of CNT3027145

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLSLEPFSEDQGRSAVQPSRGSRQSASLRLTGLLAR*

>peptide 2 (98 aa)
MRRGDETGEEVVLIGHERLEMGGRRGGGPRAGIAFCIRKHERSRAGQFGGSPLDWNTGAAARLAPRPRGGARRRGTASHSSSIEVGTQHRNPASPQGTQ

>peptide 3 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWRLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 4 (37 aa)
MAHLELSIPWRGSTKQPRRPTYLKFENRSRALRPRCL*

>peptide 5 (59 aa)
WRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGRAVKQKR*

>peptide 6 (30 aa)
MSDSLVRVSRRDEWGAHRPMPGARMCRGTP*

>peptide 7 (38 aa)
MGSPQADARSAHVPGHAVTDQPGSIPWRHHDPHDPRRR*

Sequence

>CNT3027145
CTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGAC
GTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGACTAAGTCGTTTCCAGGGTGGGCGGGCTGTTAAACAGAAAAGATAACTCTTCCCGAGGCCCCCG
CCGACGTCTCCGGACTCCCTAACGTTGCCGTCAGCCGCCACGTCCCGGTTCAGGAATTTTAACCCGATTCCCTTTCGAAGCTCGCGCGCGAACGCGCTGT
CGGACGGGCTTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAA
TATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCC
TGGCGCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGC
GGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCC
GGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCGCGGCTCAACGAAGCAGCCGCGCCGTCCTACCTA
TTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCACCGAGCTCCAGCTATCCTGAGGG
AAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTC
CACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCTCACTCGAACCCTTCTCAGAAGATCAAG
GTCGGTCGGCGGTGCAACCCTCGAGGGGATCCCGCCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTGACTCGCACACATGTCAGACTCCTT
GGTCCGTGTTTCAAGACGGGACGAATGGGGAGCCCACAGGCCGATGCCCGGAGCGCGCATGTGCCGGGGCACGCCGTGACGGATCAACCAGGTAGCATTC
CTTGGCGACACCACGACCCGCACGATCCCCGACGCCGATGAGACGAGGGGACGAGACGGGCGAGGAAGTCGTTCTTATCGGGCACGAGCGGCTCGAAATG
GGCGGTCGCAGGGGCGGAGGCCCCCGCGCCGGCATCGCATTCTGCATCCGAAAGCACGAGCGATCGCGCGCGGGCCAGTTCGGCGGGAGTCCGCTCGACT
GGAACACGGGCGCCGCTGCTAGGCTTGCCCCGCGCCCCCGGGGAGGCGCGCGGCGGAGAGGGACAGCTTCACATTCGAGTTCCATCGAAGTGGGTACGCA
GCACAGGAACCCCGCCTCGCCGCAAGGCACCCAGGG