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Detailed information on CNT3027140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3048148Populus trichocarpaPrunus dulcis78.9263.297.09996forward
CNT30165771Populus trichocarpaPistacia vera80.6756.4694.61018reverse complement
CNT30650539Populus trichocarpaRosa chinensis78.9269.2197.89996forward
CNT30628228Populus trichocarpaDaucus carota53.4932.0498.07675forward
CNT30705847Populus trichocarpaPrunus avium78.9263.8996.79996forward
CNT30114199Populus trichocarpaFicus carica51.6690.8198.31652forward

Expression of CNT3027140

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MTTGRINQVAFLGDTTTRTIPDADETRGRDGRGSRSYRARAARNGRSQGRRPPRRHRILHPKARAIARGPVRRESARLEHGRRC*

>peptide 2 (69 aa)
MRRGDETGEEVVLIGHERLEMGGRRGGGPRAGIAFCIRKHERSRAGQFGGSPLDWNTGAAARLAPRPRGG

>peptide 3 (44 aa)
MRPFQKSGFVARISSRITTVIRVANTIKQTITDLMSHSQFHSLN*

>peptide 4 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRIEIL*

>peptide 5 (30 aa)
MMRRQHEGRAIRRVIMNHQSNGQSPRRPFI*

>peptide 6 (32 aa)
MKYECPRLSLLIITPIPKANTIGSKSYDVIPC*

Sequence

>CNT3027140
TGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTT
TCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAG
GCCAACACAATAGGATCGAAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCA
CCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCGGACCGGCCGACCCAACCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACT
TAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAAT
TACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG
CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAG
AAATTTGAATGATGCGTCGCCAGCACGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTA
ATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACT
GATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATTCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCA
ACCAGGTAGCATTCCTTGGCGACACCACGACCCGCACGATCCCCGACGCCGATGAGACGAGGGGACGAGACGGGCGAGGAAGTCGTTCTTATCGGGCACG
AGCGGCTCGAAATGGGCGGTCGCAGGGGCGGAGGCCCCCGCGCCGGCATCGCATTCTGCATCCGAAAGCACGAGCGATCGCGCGCGGGCCAGTTCGGCGG
GAGTCCGCTCGACTGGAACACGGGCGCCGCTGCTAGGCTTGCCCCGCGCCCCCGGGGAGGCG