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Detailed information on CNT3027096


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377828Populus trichocarpaArabidopsis thaliana28.1628.4187.7698forward
CNT30404182Populus trichocarpaBeta vulgaris61.2140.8884.04213forward
CNT30711924Populus trichocarpaGlycine max63.2240.0786.82220forward
CNT30563287Populus trichocarpaActinidia chinensis68.3951.2981.51238forward
CNT30555741Populus trichocarpaOryza glaberrima29.8947.0682.69104forward
CNT30312764Populus trichocarpaCamelina sativa66.9561.884.98233forward
CNT30264951Populus trichocarpaBrassica rapa60.0662.284.69209forward
CNT30129110Populus trichocarpaCorymbia citriodora60.6354.3883.89211forward
CNT30478263Populus trichocarpaArabidopsis halleri32.4732.6684.96113forward
CNT30619828Populus trichocarpaCajanus cajan56.3254.1484.18196forward
CNT30597166Populus trichocarpaOryza meridionalis22.1327.384.4277forward
CNT30105511Populus trichocarpaOryza longistaminata29.8941.682.69104forward
CNT30104583Populus trichocarpaOryza rufipogon29.8949.0683.65104forward
CNT30578422Populus trichocarpaOryza barthii29.8950.2482.69104forward
CNT30604899Populus trichocarpaOryza punctata27.340.7784.2195forward
CNT30333329Populus trichocarpaCynara cardunculus29.621.2885.44103forward
CNT3049510Populus trichocarpaCucumis sativus65.5256.4484.65228forward

Expression of CNT3027096

Peptides detected in this lncRNA

>peptide 1 (76 aa)
FPTMPSRVSRVLKEAARSLAQMFLPSTTPAKRYFPLGKSPLIKSRVLVPRTRSKPNAVTPFKEVRVLYCSAGISAK*

>peptide 2 (86 aa)
FSNNALKSFEGAERSSKIISPDVPSIYHSSKEIFSLREITLDQVKGLGSTNQIKTKCSNTLQRGEGLVLLGRNISKVGFDKNIQAR*

Sequence

>CNT3027096
CTTTTCCAACAATGCCCTCAAGAGTTTCGAGGGTGCTGAAAGAAGCAGCAAGATCATTAGCCCAGATGTTCCTTCCATCTACCACTCCAGCAAAGAGATA
TTTTCCCTTAGGGAAATCACCCTTGATCAAGTCAAGGGTCTTGGTTCCACGAACCAGATCAAAACCAAATGCAGTAACACCCTTCAAAGAGGTGAGGGTC
TTGTATTGCTCGGCAGGAATATCAGCAAAGTAGGTTTCGATAAGAACATTCAAGCCAGATAGAGTTGACTCTAGTGCAGAGTAGGCTCATCAAATTGAAT
CCAGGATGCACCAGCTTCTTTAAGCTCTGAAATAACCTCCCTGAAGAT