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Detailed information on CNT30270405


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317353Chenopodium quinoaCorylus avellana22.077.3288.7898forward
CNT30526301Chenopodium quinoaPhaseolus vulgaris22.318.7186.8799forward
CNT30631505Chenopodium quinoaVigna unguiculata21.1712.6786.1794forward
CNT30167505Chenopodium quinoaPistacia vera21.45.6488.4295forward
CNT3085860Chenopodium quinoaVigna radiata22.38.5185.8699forward
CNT3079114Chenopodium quinoaBrassica juncea20.52.9383.5291forward
CNT30724929Chenopodium quinoaLupinus angustifolius20.56.4285.7191forward

Expression of CNT30270405

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVLFLHLFLCLKLCVLTLCLSPPPAYSFFYLPFSRLYLFLLCK*

>peptide 2 (50 aa)
MKNICGFITMILNKILGFFFSLIYKIFFNNFTVEKADQLAAIQSKWRWIK*

>peptide 3 (33 aa)
MLEAMRAYSLSVSPARLLVFLSSFFSSLPVFAL*

Sequence

>CNT30270405
TTTCACTGTTTCCAATCTACTCAACACTAAATTAGGGCAATCTTTCTTCTATTAAATGCCCTAATTACCTAATTAGGGCATCCTTTCGGCGTAAATAACC
AAACAAATGAATGGTAAGAGGGAGGTGACAGAAGAGAGTGAGCACACATGGTTCTTTTCTTGCATCTTTTCTTATGCTTGAAGCTATGCGTGCTTACTCT
CTGTCTGTCTCCCCCGCCCGCCTACTCGTTTTTCTATCTTCCTTTTTCTCGTCTTTACCTGTTTTTGCTCTGTAAATGAAAAATATTTGTGGTTTTATTA
CCATGATATTGAATAAAATTTTAGGGTTTTTTTTTAGTTTAATTTACAAAATATTTTTTAATAATTTTACTGTAGAGAAGGCTGATCAGTTGGCTGCAAT
CCAGAGCAAATGGAGATGGATCAAGTGATAATTAATCAAGCGTG