« Back to Chenopodium quinoa search


Detailed information on CNT30270249


BLAST search results

BLAST vs Swiss-Prot:
sp|Q941L0|CESA3_ARATH, E-value = 4e-165

BLAST vs NONCODE:
NONPOPT001661, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672695Chenopodium quinoaSetaria viridis1383.681.92260forward
CNT30639474Chenopodium quinoaNymphaea colorata10.7534.2480215forward
CNT30500458Chenopodium quinoaCoffea canephora17.763.178.81354forward
CNT30195224Chenopodium quinoaPisum sativum6.530.7382.31130forward
CNT30636129Chenopodium quinoaCapsicum annuum5.0521.1382.18101forward
CNT30287901Chenopodium quinoaTriticum aestivum5.541.5184.55110forward
CNT30224742Chenopodium quinoaHordeum vulgare3.9533.7684.8179forward
CNT30393905Chenopodium quinoaTriticum turgidum7.4545.8581.88149forward
CNT30144912Chenopodium quinoaMedicago truncatula9.7572.4978.97195forward
CNT30314318Chenopodium quinoaCamelina sativa8.555.5683.53170forward
CNT30216Chenopodium quinoaZea mays10.7569.8179.53215forward
CNT30229639Chenopodium quinoaAnanas comosus10.636.0582.55212forward
CNT30655297Chenopodium quinoaRosa chinensis7.928.5781.65158forward
CNT30689838Chenopodium quinoaTriticum urartu6.2541.9583.2125forward
CNT30362547Chenopodium quinoaSorghum bicolor6.827.9883.82136forward
CNT3026780Chenopodium quinoaPopulus trichocarpa9.420.9680.32188forward
CNT30149105Chenopodium quinoaBrachypodium distachyon422.68580forward
CNT30102429Chenopodium quinoaOryza rufipogon7.7521.883.87155forward
CNT30112612Chenopodium quinoaFicus carica13.429.3583.96268forward
CNT3051367Chenopodium quinoaCucumis sativus424.9286.2580forward

Expression of CNT30270249

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MHLKSCQNIFCHGTINPTNLHKCSINHKFVWRCTISGNYDENSHIRYLSIYSTLTG*

>peptide 2 (50 aa)
MSKMMIRWMHNHQIQKITQSMRVERVEVLHKSNCSYLRDNELPSKQTDSW*

>peptide 3 (47 aa)
MSGPVTRVVNGSTLTHNKEKMDASRIDQTTTIVGVLFWRPMRPLRKG*

>peptide 4 (29 aa)
MERKSDKNQTLAKLLICNSKRMKDVKNDD*

Sequence

>CNT30270249
GTACAATCATCCGGTATTACAAAGATCTTCAAAGAAATTGCTTATCGAATTTCACTATGACAAAACAAATCAAAAAATTTTAACTTAATGACCTAGCTTC
CAGTGGCCAATCTGATCCAAATACAAGAGATTCTTGAAAGAGACAGCTAACTTTCTAAATAATACACTTAACTGCTTGGTAACAAAAAGGAGGGAGAAAA
AGAGGAAAAAAGTAGGACATATAAAACAATTGCAATTGGCTATAGTATATGTGCTCACTGTTTATACATATTATAGACGATAACTTCAGGCCAAGAGATG
ATAAGTTATGATCCAATACCTTCAAATATTGCTGGAATGAAGTATGGGATAAATCCGAGGAAGTTGTGAAGCTTTCTCCTTATCGAGCCATACTAGCAAT
TAATTCCACATATCTGAATGTCAGGACCAGTCACCCGGGTTGTAAATGGATCAACTCTAACCCATAACAAGGAGAAGATGGATGCAAGTAGAATCGACCA
GACAACAACAATTGTTGGAGTTCTGTTCTGGCGACCCATGAGACCCTTGAGGAAAGGATAAAGATGGACAATCACCCAAAATGCGAAGAAAAGCTTGCCA
AAAAGTGGTCCCCATGATTGGTAGCCACTGTTGATGGCATAGGATATTCCAGCAACCACTGCGACGAGGTTTATTATGAGAAGAGTGGTTGGTGGGATAA
GCAAAGTTGTCCATTTGAACAAGTAGAGTTCAGCGAAATCCCCGTCCTCATCTGATGCCTTGGAAGTGACAGTAAAATTGGTATCAATACCAGCGAGAAC
TTTGAGTATACCTTGGAAAACGGCAAACAGATGGGCTGAAACTCCTCCAATAACCCAAAACTGCTCATTCCTCCACCATTCATCAATTCCCACACCACTC
CATCTCATTTCCAGTATACCAGTAGCAAAGATGGAAAGAAAGAGTGACAAAAACCAAACACTAGCCAAGTTACTAATCTGCAATTCGAAGAGGATGAAAG
ATGTCAAAAATGATGATTAGGTGGATGCACAATCATCAAATACAGAAAATTACACAAAGTATGAGAGTTGAGAGGGTGGAAGTATTGCACAAATCAAATT
GTAGTTACCTGAGGGATAATGAACTTCCCAGTAAGCAGACAGACAGCTGGTAAGGTACAATATGCAAGAAGTGGAATGGATGTGATTGGGTAAATTGTGG
TGTTGACATAAGCAAATCTCTCAAGCCATTTCAACCGTCCATTGTAACCATACCATAAAGGACAATGACGGCTGAAGAGAATCTCAACTGAACCTAAAGC
CCACCTAAGCACTTGATTTAGACGATCGGAAAGATTGATAGGAGCAGATCCCTTAAAAGCTGCACGCTTAGGCATACAATAAATTGAACGCCATCCTCTA
GCATGCATCTTAAATCCTGTCAGAATATCTTCTGTCACGGAACCATAAATCCAACCAATCTGCACAAATGTAGCATCAATCATAAGTTTGTCTGGCGTTG
CACGATCAGCGGGAATTATGATGAAAACAGTCACATAAGATATCTTTCAATATATTCAACGTTAACTGGTTAACAGAGAATCCAGAGTCGATTTCACGTC
CATATTAATAGTGTTTTAACTCAATGAAGGTATGACAGTTCAGTTGTATTTTTAATTGCTAGCTAATGATAATATCATGTAATACTAAACTGCACTGGTG
AGACTCGATGAGCAAGAGGTTTATAGCTCAATCAAAAAAACAGATACTAAAGCCGAAAACAGAATAGTGAAGTCATGATGATAAAGAAAACATACTTCAG
CTCCCCAGTCAGTCTTGTCCTCATAGCCACAACTGATAACATGAATAGCTTCTTTTAGAAGAGTGTCAGGGTTTGCAGACTGTGGAACACCACCATTTTC
CATGAGCGTAGAAGCCACAAATACTTCTGATTGACCAAACCTTTTCTCCAAGCTCATTTGTGACATAAGTAGTGACTTCTCATCATCAAATCCAGCTCCT