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Detailed information on CNT30269710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT001124, E-value = 2e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Chenopodium quinoaSetaria viridis29.296.9895.93123forward
CNT30162048Chenopodium quinoaPistacia vera14.0521.3891.5359reverse complement
CNT3093646Chenopodium quinoaSolanum tuberosum47.869.7293.53201forward
CNT30226250Chenopodium quinoaHordeum vulgare47.1415.0194.44198forward
CNT30592653Chenopodium quinoaMusa acuminata49.528.6893.75208forward
CNT30627905Chenopodium quinoaDaucus carota60.7110.1696.86255forward
CNT30680520Chenopodium quinoaTriticum urartu47.146.8494.95198forward
CNT30574571Chenopodium quinoaVitis vinifera33.572.2995.74141forward
CNT30104358Chenopodium quinoaOryza rufipogon1523.1610063reverse complement
CNT30578173Chenopodium quinoaOryza barthii47.145.8394.95198forward

Expression of CNT30269710

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FLRQNIHIHRIAIIIRIIIITNLFEERRNSKDN*

>peptide 2 (36 aa)
MIEARTLSGQVPLIDHNDIVEMLHGPIYIERERESP*

Sequence

>CNT30269710
CTTTCTGCGCCAGAATATACATATACATAGAATAGCTATCATAATAAGGATTATTATCATAACAAATTTGTTTGAAGAAAGGAGAAATTCAAAAGATAAC
TGAAAATATATTCTTTTATAAGATTCGCCTTCCTAAAAGCGAATGAATCCCCAACCAACTATGGACATTTTCGGGGAGTAGCCCGCTTCCCATTACTCAA
TAGAGCAATTCCTCGCACATAATTAAGGGAGCCATTGAAAGGTGACTAAAACACCAGAAACGGCGACTACCCGAGCTAATGATAGAGGCAAGAACACTTT
CCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACCCATATATATAGAAAGAGAAAGAGAATCACCTTGATACTAAACCAG
ATCGAGCCCGGGATCCTCTT